Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g01002 ATGGCTAATTTCACTTCCTTCTCTTCTTCATCTTCTACTCCTCCTCCACCACCTTCTTTCTCATACATTTCAGCTCCATCTTCTTCTTCTTCTTCAACTTTTGATGATGACTCTTTTGAAGATTCCTGCAGTATATGCTTAGAATCCTTCACTCTTCATGACCCATCTACTGTTACCTGTTGCAAACATGAATATCACCTGCATTGCATTCTTGAATGGTCACAGAGAAGCAAAGAGTGCCCAATATGTTGGCAATCACTTTCTTTGAAAGACCCTGCTAGCCAAGAGCTTCTGATCGCTGTGGATGCTGAAAAAAGCTCAAGATCAAGAAACAATTATTCATCTTCACCCACTAATTCTCGTGTCCCCTTTGGATATTCTAATGATGACCATGATGATTCTTGCTCAGATGACATTGATGTTAATGAGGAAATTATGCAGCGCCTATATGCCGCTGCAAGTAGAGCTCGTCTTGTCCAGAGACAGAAAAGACAAGGATCGCCCGGAGCAGGTCCATCAGAGATGTTTGTTTTCAACTCTTCTTTGCAACCGACTCTTACAATTTCACCAGGTGACAGTAGTTCACCGATCTATGGTTTACCATCAATTGGCCGCAATCATCCTAAGGTTGCAAGAAACATTAGTCGTATTGAGACTGATGTCCCTTACCGGCCCAGAGTTCTTTACAGTCCGTCACCACCTCAGGATGAGAGCAAACTGAACACTTCTGAGATGTTCTCCTTTCCCGAGTCCATCAAATCCAAATTGTCTGCTGCATCAGCCAGATATAAGGAATCAATTTCTAAAAGTACCCGTGGCCTTAAAGAGAAGTTACTTGCTCGTAATGTGACAGTGAAAGAGCTGAGTAAAGGTGTTCAGCGTGAGATGAATGCAGGCATAGCTGGAGTTTCACGTATGATTGAACGCCTTGATCTTGCCTCAAAAAGGTCGAGTTCTCCTCTCATTCCAGTCCGTAGTGAGGGAACTTCAGGCTTTTCCGAAGGGAGGTTTGTTCTAGAGAAAGACATTGAGCATCGTCCAAATGGAGCAAGTGGAGATCATAATGTTAGTTCAGCTGCTCCCTCGCACATTTCTAGCACTGCTGTTGTTGGTCGAACGGAAATTCCTTCATGTGTTCAGGGTGGGCAATGA 1152 0.4366 MANFTSFSSSSSTPPPPPSFSYISAPSSSSSSTFDDDSFEDSCSICLESFTLHDPSTVTCCKHEYHLHCILEWSQRSKECPICWQSLSLKDPASQELLIAVDAEKSSRSRNNYSSSPTNSRVPFGYSNDDHDDSCSDDIDVNEEIMQRLYAAASRARLVQRQKRQGSPGAGPSEMFVFNSSLQPTLTISPGDSSSPIYGLPSIGRNHPKVARNISRIETDVPYRPRVLYSPSPPQDESKLNTSEMFSFPESIKSKLSAASARYKESISKSTRGLKEKLLARNVTVKELSKGVQREMNAGIAGVSRMIERLDLASKRSSSPLIPVRSEGTSGFSEGRFVLEKDIEHRPNGASGDHNVSSAAPSHISSTAVVGRTEIPSCVQGGQ 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g01002 383 SMART ring_2 43 83 IPR001841 -
Trre4g01002 383 SUPERFAMILY RING/U-box 38 90 - -
Trre4g01002 383 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 114 IPR013083 -
Trre4g01002 383 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 11 92 - -
Trre4g01002 383 MobiDBLite consensus disorder prediction 351 383 - -
Trre4g01002 383 MobiDBLite consensus disorder prediction 108 125 - -
Trre4g01002 383 Pfam Ring finger domain 41 83 IPR001841 -
Trre4g01002 383 ProSiteProfiles Zinc finger RING-type profile. 43 83 IPR001841 -
Trre4g01002 383 MobiDBLite consensus disorder prediction 344 383 - -
Trre4g01002 383 MobiDBLite consensus disorder prediction 108 128 - -
Trre4g01002 383 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g01002 Trre-Chr4 7699969 7703114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g01002 37 91 C3H Transcription Factor Family AT4G00335 45.455 7.20e-12 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g01002 K19043 - gmx:100785684 364.77