Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00991 ATGGATCAAGAGAAGCAAGGGAAACCAAAAGAACAAGGGAATGATATTCCAACACAAACTCATGACGAAAACCAAAATAAACCAAACCAAATAGCGCCACTATCTCGCCCTCTAATTCATACCGAAGGTACTTCCGCCTTTTCACCCTACCTGAGTAGAGAGCATTTCCAACCACAAAAACAACAAGCATCGCAGAAAACACTCGACACTTTTTGGGCAAATCAAAACCGTGAAATTGAGGAGACAATTGATTTCAAAGCTAATTGTTTGCCTTTGGCAAGGATTAGGAAGATCATGAAAGCGGACGAGGGAGTGAGTATGATATCATCAGAGACACCTGTTCTATTTGCTAAAGCATGCGAGATGTTTATTACGGAGTTGACAACGCGGTCATGGGATAACGTAGTGGCGAACAAAAGAAAAACACTTCAAAAGAGTGATATTGCATCTGCAATCTCAAGGAATGATATGTTTGATTTTCTAGTTGATATTGTTCCAAGGGAAAACACATTGGAGAATAACATATCTATGGACATACCAAGAAGAGGAAGTGCTACATTTGAAAATGTTCCTTATTATTATGTTCCTTTTCCTGTGCCTATGCCATCTCAGGATGCTGCTACAGGTCCATCATATGGTCCTCCAAGAATGCTTATGGGAAGATCTCTTATTGATCAACCTCAACACAACAGACAGCTACATCTTCCTTTTGCAACTCAAGTGTTGCCAATCCAAAAACAAGATGAACATTCTTCCAATTTGCCAGATTCAGATGATTGA 780 0.3974 MDQEKQGKPKEQGNDIPTQTHDENQNKPNQIAPLSRPLIHTEGTSAFSPYLSREHFQPQKQQASQKTLDTFWANQNREIEETIDFKANCLPLARIRKIMKADEGVSMISSETPVLFAKACEMFITELTTRSWDNVVANKRKTLQKSDIASAISRNDMFDFLVDIVPRENTLENNISMDIPRRGSATFENVPYYYVPFPVPMPSQDAATGPSYGPPRMLMGRSLIDQPQHNRQLHLPFATQVLPIQKQDEHSSNLPDSDD 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00991 259 FunFam Nuclear transcription factor Y subunit gamma 55 167 - -
Trre4g00991 259 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 90 152 IPR003958 -
Trre4g00991 259 MobiDBLite consensus disorder prediction 1 17 - -
Trre4g00991 259 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 48 183 - -
Trre4g00991 259 MobiDBLite consensus disorder prediction 18 32 - -
Trre4g00991 259 MobiDBLite consensus disorder prediction 1 39 - -
Trre4g00991 259 SUPERFAMILY Histone-fold 62 161 IPR009072 GO:0046982
Trre4g00991 259 Gene3D Histone, subunit A 52 167 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00991 Trre-Chr4 7632444 7633223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00991 71 220 CCAAT-HAP5 Transcription Factor Family AT1G08970 56.579 4.62e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Trre4g00991 CBFD_NFYB_HMF 1.1e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00991 K08066 - aprc:113855583 192.971