Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00979 ATGGACTGTAATAAAGAAGAGGCCTTAAGGGCCAAGAGTATTGCTGAAAAGAAAATGGAAAGCAAAGATTTCATTGGGGCTCGTACAATTGCCCTTAAGGCTCAGAAGCTATATCCTGATCTGGAGAATATTGCTCAAATGCTTGTTGTTTGTGATGTGCATTGCGCTGCTGAGCAGAAATTACTGGGTAATGTTAAGGTGGTGGACTGGTATAAAGTTCTACAAGTTGATCGGAATGATAATGATGTAATAATTAAGAAGCAATATAGGAAGTTTGCTCTCCAGCTTCATCCTGACAAAAACAAGTTTGCTGGCGCAGAAGCTGCGTTTAAGCTGATTGGGGAAGCTCAGAGAATTCTTTTGGATAGAGAAAAACGATCATCACTTAACATGAGCTTGAGCAGTTTTTCAATGAACAGAACTGCCATGCCATCTCATCATCAACGAAGTGTTCCGGTGAATTTTAATCCTGTGATGCAAACTAATGTCCGGCCTGTTTTTCCGAACTTAAATCCTCAGCAGCGGCAGCCAACTCAGCAGGGAGTTAATGGTGGTGTCCAGTCCCCTACATTTTGGACTATGTGCTCATTTTGTTCAGTTAAGTTTGAGTATTACAGGGCAGTTTTAAATAGATCTCTTCGCTGTCAACAGTGCAGTAAGCCCTTCATTGCATATGAGATCGATCCGCAAAGTACAAAACCGGCAACCAATTCAAGTCAGAAACAGCAGCCAATTCAGCAGAACAATACACCGAATCATGGTGCTTTTAAGTTTGGTGTTGGATCTCAAAGTGATGTCTTTGCTAAGAGGCCCAAAAAAGAATTTCATCATAAGAAAGGCTCTACTTCAAATGTCTCTGTGAAGCCAAATGGAAAGAGAAAGAGAAAGAATGTAGTAGAATCCAGTGAAAGTTCTATTGGCAGCACTGATTCTGAAGATGATACAGTTGCTAACAACAATGGTTTTCAGGGTGTTCCTACTTCTAGAGACGAGCGTCCACGTAGATCTACACGGCAAAAACACCAGGTTTCCTACAAGGAGAATGGAAGTGATGATGATGCTGAGTTAAAGCAACCTATAAAACAGGGTAAGGAGAGTGGTTCGCCATACAGTGATGGTGAAAATAGTGATGAAATTGAAATGAATGATCAGAATGGTTTGGCTGCTGGTCTGAAAGATGGTCAGAAAGAGGCAAAGCAGAAGCAAAAAATTTATTCTGAAGAAAGCTCAGGAAATATAGATGTTAAAATTAAGGAGGTAGGAAGAAAAGAAACAGTGGGAAGCTCAAAGATAGATGAAGCTTCAGAGCTATCGGACTCCAAATCATCAGATCATTTAGATGATTTTGTTTATCCTGATCCAGAGTTCAGTGACTTTGATAAGGACAAAAAAGAGGAATGTTTCGCTTCCGGGCAGATTTGGGCTGTTTATGATGATATAGATGCTATGCCTAGATTCTATGCTATAATCAAAAAAGTTTTTTCTCCTGGATTTAAGTTGCAGATAACTTGGCTTGAGGCAGATCCACATGACAAAGATGAATGCAAGTGGATTGAGGAGAAACTGCCAAATGCTTGTGGGAAGTATAAACTTGGTACGACTGTAACCACTAAAGATCAACCGATGTTCTCTCATCAGATTTTATTTGAAAAGATTGACCGCACTACTTTTAAAGTGTATCCTAGAAAAGGAGAAACTTGGGCTCTTTTTAAGAATTGGGATATTAAATGGTATATGGATGCAAAATCTCATCAGAAGTATGATTTTGAATTTGTTGAGATCTTGTCGGATTATGTTGAAGGCGCGGGAGTAATTGTTGCATACTTGGCTAAGTTGAAAGGTTTTGTGAGCCTCTACTCTCAAATTAAGGAGGGACGTAATTGCTCGTTTCAGATTCCACCAGCTGAGTTGTTCAGATTCTCTCACAGGGTTCCATCTTTTAAAATGACTGGTAAGGAAAGAGAAGGTGTTCCTGTAGGATCTTATGAACTTGATCCTATATCCTTGCCGGTGGAAGAGTTTGCTGCTACTGATGACGTGGAAGTAAAGGTTGAATCTACTGCCAAGGTTAATTTGGACAGAAGCAATTTGGTAGAGAAGAAGAAGGATCCTGTTGATCATATTGATGATGTCAGTGCTCCATCAGCTTCGGTCGAAGATTCTTTTGAAGTTCCAGACCCTTCGTTCTACCAATTTGATGATGAGAGGTCCTATGAAAAGTTTGAGGCTGGCCAGATTTGGGCATTTTATTGCGATGAGGACCAACTTCCGAAATATTACGGTCAGATTAAAGAGGTTAGGAGGATTGGCTCAACAATTGAGTTGCAAGTAATTTATCTTACTGGCTGCTGGCTACCTAAGAATGTTAAAAGATGGGATGATGAGGATATGATCATTTCCTGTGGAAGATTTAAAGTCAAGCCAAATGGTAAGCTCTGTACTTACCGTAACACCAATTCTGTTTCACATCAGGTGCATGCAAGTCTCGTTGGAAAGAACTTTGAAATTTTTCCTCGGAAGGGTGAAATTTGGGCATTGTATAGGGGATGGACGACTGAACTCAAACGTTCTGATTTGAAAAACTGTGAGTATGACATAGTGGAAGTTATTGAAGAAGGTGATTCGTGGACAGATGTTTTATTTCTGGAGAAGGTAAGTGGTTACAGTTCAGTTTTTAAGGGCAAATTAACCAGCGGAGGAACAAAGATGTCCATTACGATCCCAAGGCTCGAGCTGCTCAAATTCTCCCACAAGATACCTGCTTTCAAACTGAGAGAAGAACATGACAGCAATCTGAAAGGCTTCTGGGAACTTGATCCGGGTGCAATACCAGTCCATTATCTTAGATAG 2850 0.4032 MDCNKEEALRAKSIAEKKMESKDFIGARTIALKAQKLYPDLENIAQMLVVCDVHCAAEQKLLGNVKVVDWYKVLQVDRNDNDVIIKKQYRKFALQLHPDKNKFAGAEAAFKLIGEAQRILLDREKRSSLNMSLSSFSMNRTAMPSHHQRSVPVNFNPVMQTNVRPVFPNLNPQQRQPTQQGVNGGVQSPTFWTMCSFCSVKFEYYRAVLNRSLRCQQCSKPFIAYEIDPQSTKPATNSSQKQQPIQQNNTPNHGAFKFGVGSQSDVFAKRPKKEFHHKKGSTSNVSVKPNGKRKRKNVVESSESSIGSTDSEDDTVANNNGFQGVPTSRDERPRRSTRQKHQVSYKENGSDDDAELKQPIKQGKESGSPYSDGENSDEIEMNDQNGLAAGLKDGQKEAKQKQKIYSEESSGNIDVKIKEVGRKETVGSSKIDEASELSDSKSSDHLDDFVYPDPEFSDFDKDKKEECFASGQIWAVYDDIDAMPRFYAIIKKVFSPGFKLQITWLEADPHDKDECKWIEEKLPNACGKYKLGTTVTTKDQPMFSHQILFEKIDRTTFKVYPRKGETWALFKNWDIKWYMDAKSHQKYDFEFVEILSDYVEGAGVIVAYLAKLKGFVSLYSQIKEGRNCSFQIPPAELFRFSHRVPSFKMTGKEREGVPVGSYELDPISLPVEEFAATDDVEVKVESTAKVNLDRSNLVEKKKDPVDHIDDVSAPSASVEDSFEVPDPSFYQFDDERSYEKFEAGQIWAFYCDEDQLPKYYGQIKEVRRIGSTIELQVIYLTGCWLPKNVKRWDDEDMIISCGRFKVKPNGKLCTYRNTNSVSHQVHASLVGKNFEIFPRKGEIWALYRGWTTELKRSDLKNCEYDIVEVIEEGDSWTDVLFLEKVSGYSSVFKGKLTSGGTKMSITIPRLELLKFSHKIPAFKLREEHDSNLKGFWELDPGAIPVHYLR 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00979 949 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN-RELATED 1 944 - -
Trre4g00979 949 MobiDBLite consensus disorder prediction 424 448 - -
Trre4g00979 949 MobiDBLite consensus disorder prediction 301 326 - -
Trre4g00979 949 CDD DnaJ 69 122 IPR001623 -
Trre4g00979 949 Gene3D DnaJ domain 67 178 IPR036869 -
Trre4g00979 949 Pfam Domain of unknown function (DUF3444) 449 653 IPR024593 -
Trre4g00979 949 Pfam Domain of unknown function (DUF3444) 720 927 IPR024593 -
Trre4g00979 949 MobiDBLite consensus disorder prediction 230 259 - -
Trre4g00979 949 MobiDBLite consensus disorder prediction 230 257 - -
Trre4g00979 949 SMART dnaj_3 68 125 IPR001623 -
Trre4g00979 949 ProSiteProfiles dnaJ domain profile. 69 133 IPR001623 -
Trre4g00979 949 Pfam DnaJ domain 69 128 IPR001623 -
Trre4g00979 949 SUPERFAMILY Chaperone J-domain 65 136 IPR036869 -
Trre4g00979 949 MobiDBLite consensus disorder prediction 272 380 - -
Trre4g00979 949 PRINTS DnaJ domain signature 71 89 IPR001623 -
Trre4g00979 949 PRINTS DnaJ domain signature 105 125 IPR001623 -
Trre4g00979 949 PRINTS DnaJ domain signature 89 104 IPR001623 -
Trre4g00979 949 MobiDBLite consensus disorder prediction 328 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00979 Trre-Chr4 7561866 7564715 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00979 15 227 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT5G64360 31.163 2.29e-25 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00979 - - psat:127079111 1480.31