Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00978 ATGTCTCATATAGCTGTTGAGAGGAATAGGAGAAGACAAATGAATGAACATCTCAAAGTTTTAAGGTCTTTGACCCCTTGTTTCTATATTAAAAGGGGAGACCAAGCATCAATAATAGGAGGAGTTATAGAATTCATCAATGAATTGCACCAAGTTCTTCAAGCTTTGGAGTCTCAAAAGAGAAGAAAGAGTTTAAGCCCTAGCCCCGGTCCAAGTCCAAAAACACTACAACCGACGTTTCATCAATTCGATATATCCTCTGGAGGAATTGGAACTAATAATGATTTCAAGGAACTAGGAGCAAGTTGCAATTCTTCAATTGCAGATGTGGAAGTGAAAATTTCAGGTCCAAATGTGATTTTGAGAGTTATTTCTCATCGAATTCCAGGTCAAGTTTCAAGGATCATAGCTGTTTTAGAAAGTCTTTCATTTGAAGTTCTTCATCTTAACATCAGTAGCATGGAAGAGACTGTTCTATACCAATTTGTAGTCAAGATAGAGCTGGGATGTCAACTAAGTTTGGAGGAACTTGCAATGGAAGTACAACAAAGTTTTTGTTCAGAGGCACCTATTAAGTTGACTGCTGTTTGA 591 0.3739 MSHIAVERNRRRQMNEHLKVLRSLTPCFYIKRGDQASIIGGVIEFINELHQVLQALESQKRRKSLSPSPGPSPKTLQPTFHQFDISSGGIGTNNDFKELGASCNSSIADVEVKISGPNVILRVISHRIPGQVSRIIAVLESLSFEVLHLNISSMEETVLYQFVVKIELGCQLSLEELAMEVQQSFCSEAPIKLTAV 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00978 196 Gene3D - 1 64 IPR036638 GO:0046983
Trre4g00978 196 Pfam Helix-loop-helix DNA-binding domain 2 49 IPR011598 GO:0046983
Trre4g00978 196 SMART finulus 4 55 IPR011598 GO:0046983
Trre4g00978 196 FunFam Transcription factor MUTE 1 66 - -
Trre4g00978 196 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 49 IPR011598 GO:0046983
Trre4g00978 196 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 68 IPR036638 GO:0046983
Trre4g00978 196 PANTHER TRANSCRIPTION FACTOR FAMA 1 185 IPR044283 GO:0003700|GO:0010052
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00978 Trre-Chr4 7555000 7557108 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00978 1 191 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G06120 64.851 1.15e-83 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre4g00978 HLH 1.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00978 - - gmx:100810771 319.701