Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00976 ATGATTCTTCCTGAGTGCTATCCTCCATCTGGTGCAATCTCGTTACAGCAGAATCTATTGGTCTCTACCACACATGCCCACACCGCCATCACTATCTTCTACTTTGCGAAGGAAGAAGAAAAATGTAGATTTGTTCCACTCTTTCCTGATGCATTTGTGCCAGTCAAAGTCCCCTTTGAGAAAGGAGCTGGCCAGAAATTTGCTCAGCCTTCAGAAACTGGGATCGACTTAGGCTTCTTTGAGTTGGATGATCTTTCAAAGCCTTCACCTGGAGAAGACGTCTTTCCTCTTGTAATATGCGCTGAAACATGTCTGGAAACTCCCTCAGCAAACGAAACTCCTAAAACTCCGGATGATTCCATGCCAGATGCATCCCCTGATTCACCTCACATGCAAATAACTCAAGCTGTCTTGGTGAAAAGTAATGGTGATAGTGCTTTCCAGATAAAAGTTGTTAGGCAGATTCTGTGGATCGATGGTGTTCGTTATGAGTTGAGAGAGTTATATGGAATTGGAAGCTCAGAAACTACAGGCTTTGATGACAGTGATCCTGGAAAGGAGTGTGTAATATGCATGACTGAACCAAAGGATACGGCTGTCTTACCTTGTCGACATATGTGTTTGTGCAGTGAGTGTGCGAAAGCTCTGCGGCTTCAATCCAATAAATGCCCTATATGCCGTCAGCCCATTGAAGAACTTATGGAGATCAAGGTAAAGAGTGGCAATCCATGA 732 0.4413 MILPECYPPSGAISLQQNLLVSTTHAHTAITIFYFAKEEEKCRFVPLFPDAFVPVKVPFEKGAGQKFAQPSETGIDLGFFELDDLSKPSPGEDVFPLVICAETCLETPSANETPKTPDDSMPDASPDSPHMQITQAVLVKSNGDSAFQIKVVRQILWIDGVRYELRELYGIGSSETTGFDDSDPGKECVICMTEPKDTAVLPCRHMCLCSECAKALRLQSNKCPICRQPIEELMEIKVKSGNP 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00976 243 FunFam probable E3 ubiquitin-protein ligase LOG2 172 237 - -
Trre4g00976 243 SMART ring_2 188 226 IPR001841 -
Trre4g00976 243 ProSiteProfiles Zinc finger RING-type profile. 188 227 IPR001841 -
Trre4g00976 243 SUPERFAMILY RING/U-box 187 233 - -
Trre4g00976 243 Pfam Zinc finger, C3HC4 type (RING finger) 186 232 - -
Trre4g00976 243 CDD mRING-HC-C3HC5_MGRN1-like 186 227 IPR045195 -
Trre4g00976 243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 173 237 IPR013083 -
Trre4g00976 243 MobiDBLite consensus disorder prediction 108 128 - -
Trre4g00976 243 PANTHER MAHOGUNIN 24 238 IPR045194 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00976 Trre-Chr4 7535763 7539085 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00976 29 242 C3H Transcription Factor Family AT3G06140 59.535 1.39e-82 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00976 - - gmx:100786054 348.977