Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00974 ATGGGTATTTCCTGGAGCACCAGAAGAAACAATTACATCCAAAATCCACCTCCACAACCACCACCACCACCACAACTTCCACCACCACCACCACCACCTTATTATTACTCTACAGATTCGCATCCACCACCACTTCCTCCTCAACAAGGTTACAACAACTACCCTCCTCAAAACATAGGCTATGCAACTCCACCACCTCCACCTCTTCAACCTCAATCTCATTCATTCTACTTCTCTAACCCTAATGCATACACAAACTATCCCAATTCTTCTATAAATCGATTTCAATTTCATCCTTCTTATTATGTAAATCAACAGCAGCATGCTTGGGGTCCACCTCATCCCTCTTTTCATGCTCCTTCGTCAACAACAACAACAACACCACCTCCTTATGTTGATCATCAAACTGCTAAGAAGATTAGGAATCATGTTAATGTTCATAAAGATACTTTGCGTCTTGAGGTTGATCAACATAACCCTGATCATCACCTTGTTTCTTTCGTTTTTGATGCTGTCTTTAATGGCAGCATCACTATCTTCTACTTTGCGAAGGAAGAAGAAAAATGTAGATTTGTTCCACTCTTTCCTGATGCATTTGTGCCAGTCAAAGTCCCCTTTGAGAAAGGAGCTGGCCAGAAATTTGCTCAGCCTTCAGGAACTGGGATCGACTTAGGCTTCTTTGAGTTGGATGATCTTTCAAAGCCTTCACCTGGAGAAGACGTCTTTCCTCTTGTAATATGCGCTGAAACATGTCTGGAAACTCCCTCAGCAAACGAAACTCCTAAAACTCCGGATGATTCCATGCCAGATGCATCCCCTGATTCACCTCACATGCAAATAACTCAAGCTGTCTTGGTGAAAAGTAATGGTGATAGTGCTTTCCAGATAAAAGTTGTTAGGCAGATTCTGTGGATCGATGGTGTTCGTTATGAGTTGAGAGAGTTATATGGAATTGGAAGCTCAGAAACTACAGGCTTTGATGACAGTGATCCTGGAAAGGAGTGTGTAATATGCATGACTGAACCAAAGGATACGGCTGTCTTACCTTGTCGACATATGTGTTTGTGCAGTGAGTGTGCAAAAGCTCTGCGGCTTCAATCCAATAAATGCCCTATATGCCGTCAGCCCATTGAAGAACTTATGGAGATCAAGGTAAAGAGTGGCAATCCATGA 1173 0.4263 MGISWSTRRNNYIQNPPPQPPPPPQLPPPPPPPYYYSTDSHPPPLPPQQGYNNYPPQNIGYATPPPPPLQPQSHSFYFSNPNAYTNYPNSSINRFQFHPSYYVNQQQHAWGPPHPSFHAPSSTTTTTPPPYVDHQTAKKIRNHVNVHKDTLRLEVDQHNPDHHLVSFVFDAVFNGSITIFYFAKEEEKCRFVPLFPDAFVPVKVPFEKGAGQKFAQPSGTGIDLGFFELDDLSKPSPGEDVFPLVICAETCLETPSANETPKTPDDSMPDASPDSPHMQITQAVLVKSNGDSAFQIKVVRQILWIDGVRYELRELYGIGSSETTGFDDSDPGKECVICMTEPKDTAVLPCRHMCLCSECAKALRLQSNKCPICRQPIEELMEIKVKSGNP 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00974 390 SUPERFAMILY RING/U-box 334 380 - -
Trre4g00974 390 Pfam Zinc finger, C3HC4 type (RING finger) 333 379 - -
Trre4g00974 390 SMART ring_2 335 373 IPR001841 -
Trre4g00974 390 ProSiteProfiles Zinc finger RING-type profile. 335 374 IPR001841 -
Trre4g00974 390 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 320 384 IPR013083 -
Trre4g00974 390 PANTHER MAHOGUNIN 54 385 IPR045194 GO:0061630
Trre4g00974 390 CDD mRING-HC-C3HC5_MGRN1-like 333 374 IPR045195 -
Trre4g00974 390 MobiDBLite consensus disorder prediction 255 276 - -
Trre4g00974 390 MobiDBLite consensus disorder prediction 1 76 - -
Trre4g00974 390 MobiDBLite consensus disorder prediction 14 51 - -
Trre4g00974 390 FunFam probable E3 ubiquitin-protein ligase LOG2 319 384 - -
Trre4g00974 390 MobiDBLite consensus disorder prediction 108 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00974 Trre-Chr4 7521596 7526215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00974 26 389 C3H Transcription Factor Family AT3G06140 51.220 6.57e-105 312
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00974 - - vra:106775674 482.256