Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00966 ATGCATTTTTACCATCTTTTTAGGGTTTTTGAGTTTAGTGGTATTGTTAGAAAATTCTTACTTCAAAATTCACTCTCACTATCCTTTCCGAGTTCTTACACCAATTTCATAATCATCCTCCCACAATCAAGAGAAGATTTGTTTCTTGAGGAAACAAGAAGATTAAAAAACAGTAGGGACTTCATAGCTCCTTGTAAGTGCAAAGGTACTTCAAAATATGTTCATCGAGAGTGTTTGGATCATTGGCGATCTGTTAAGAAACATGATAAACCATAG 276 0.3406 MHFYHLFRVFEFSGIVRKFLLQNSLSLSFPSSYTNFIIILPQSREDLFLEETRRLKNSRDFIAPCKCKGTSKYVHRECLDHWRSVKKHDKP 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00966 91 SMART ringv_2 53 90 IPR011016 GO:0008270
Trre4g00966 91 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 43 90 IPR013083 -
Trre4g00966 91 ProSiteProfiles Zinc finger RING-CH-type profile. 48 91 IPR011016 GO:0008270
Trre4g00966 91 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 58 87 - -
Trre4g00966 91 Pfam RING-variant domain 56 86 IPR011016 GO:0008270
Trre4g00966 91 SUPERFAMILY RING/U-box 55 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00966 Trre-Chr4 7474600 7477463 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00966 57 87 C3H Transcription Factor Family AT2G22120 80.645 1.45e-15 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00966 - - egt:105972890 68.9366