Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00965 ATGCATTTTTACCATCTTTTTAGGGTTTTTGAGTTTAGTGGTATTGTTAGAAAATTCTTACTTCAAAATTCACTCTCACTATCCTTTCCGAGTTCTTACACCAATTTCATAATCATCCTCCCACAATCAAGAGAAGATTTGTTTCTTGAGGAAACAAGAAGATTAAAAAACAGTAGGGACTTCATAGCTCCTTGTAAGTGCAAAGGTACTTCAAAATATGTTCATCGAGAGTGTTTGGATCATTGGCGATCTGTTAAGTTGAAATGTAGAAACTACTTTGGTGCTGCTGACTATCTTTATCAGTACAGAGCATCATGCAAAATCATAAACATGATAAACCATAGATGA 348 0.342 MHFYHLFRVFEFSGIVRKFLLQNSLSLSFPSSYTNFIIILPQSREDLFLEETRRLKNSRDFIAPCKCKGTSKYVHRECLDHWRSVKLKCRNYFGAADYLYQYRASCKIINMINHR 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00965 115 ProSiteProfiles Zinc finger RING-CH-type profile. 48 103 IPR011016 GO:0008270
Trre4g00965 115 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 111 IPR013083 -
Trre4g00965 115 CDD RING_CH-C4HC3_MARCH 57 92 - -
Trre4g00965 115 SUPERFAMILY RING/U-box 55 88 - -
Trre4g00965 115 Pfam RING-variant domain 56 85 IPR011016 GO:0008270
Trre4g00965 115 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 58 88 - -
Trre4g00965 115 SMART ringv_2 53 90 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00965 Trre-Chr4 7474600 7477467 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00965 57 86 C3H Transcription Factor Family AT2G22120 83.333 5.88e-15 67.4