Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00963 ATGATTATTCCAGTGCCAGCAATATCATCCTCTGCCTGCAAACAAGACATGCCCTTAATAAATTTCCAAAAGGGACTCAACAAAATGGAATCATTATTTCATAATAGAAACAAAGATAAGGTGGTAGTGATTATGGGGGCCACAGGAACTGGAAAGACCAAATTAGCCATAGATTTGGCCAAACATTTTCAACCAGCTGAAATTGTGAATTCAGATAAAATGCAAGTTTATAAATGTCTAGACATTACAACAAATAAGGTGACAGAAGAAGAGTGTGATGGGGTCCCACACCATCTCTTAGGTGTATTTGATCCAAATTCAAATTTCACTGCCAATGATTTTTGTTATCATGCTTGTTCAGCTATTGATTCCATTGTGGAAAAAGATGGATTACCAATTATTGCTGGTGGCTCAAATTCATATTTAGATGCTTTAGTGAATCATTGTAGTGAATTTAGGTTAAGGTATGAATGTTGTTTTCTTTGGGTTGATGTTTCATTACCAATTCTTCATTCATCGCTTCAATTGCGCGTTGATCGCATGATTGAAGCTGGTCAGTTAGATGAAGTTCGTGACTTTTTTGACCCGTTGAGTGATTATACAAAAGGGATTCGAAGAGCTATTGGGGTGCCTGAATTTCATGATTTTCTAATAGCGGAAGCAAATTCAGCGGACGAGAGAATTAAGAAGAGACTTTTGGAAGATGCTATTGATAGGCTCAAGATTAATAATTGCATGCTTGCGAATCGACAGGTTCAGAAGATTCGTCGGTTAAATGGAATGTGGAAAAGGAGTATGCATCGTCTTGATGCCACTGAAACACACCTTAGGCGTGGTTCACATGCTAGTAAGGAGTCATGGGATGATAACGTGCTTGCAAAAAGTCTTGTGATTCTCTACAATTTTCTTTACGGGGAAACACGAGTTTGCTCTATAAGTGTATCATCAAAAGATGTAATTGCCGCATTTTCTGGGTCATCGCAGACACTGGCATTGCCTGCTATTGCGGCGGCGACTCATTAG 1023 0.3881 MIIPVPAISSSACKQDMPLINFQKGLNKMESLFHNRNKDKVVVIMGATGTGKTKLAIDLAKHFQPAEIVNSDKMQVYKCLDITTNKVTEEECDGVPHHLLGVFDPNSNFTANDFCYHACSAIDSIVEKDGLPIIAGGSNSYLDALVNHCSEFRLRYECCFLWVDVSLPILHSSLQLRVDRMIEAGQLDEVRDFFDPLSDYTKGIRRAIGVPEFHDFLIAEANSADERIKKRLLEDAIDRLKINNCMLANRQVQKIRRLNGMWKRSMHRLDATETHLRRGSHASKESWDDNVLAKSLVILYNFLYGETRVCSISVSSKDVIAAFSGSSQTLALPAIAAATH 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00963 340 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 38 302 IPR039657 -
Trre4g00963 340 Gene3D - 38 303 IPR027417 -
Trre4g00963 340 FunFam Adenylate isopentenyltransferase 5, chloroplastic 167 266 - -
Trre4g00963 340 Pfam IPP transferase 154 257 - -
Trre4g00963 340 Pfam IPP transferase 75 150 - -
Trre4g00963 340 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 37 194 IPR027417 -
Trre4g00963 340 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 167 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00963 Trre-Chr4 7454724 7455746 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00963 155 319 C2H2 Transcription Factor Family AT2G27760 33.508 6.84e-22 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00963 K10760 - gmx:100812928 477.248