Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00962 ATGGTGAATCGTCCTGCATGTGCTGCTTGCAGACACCAAAGAAAAAAATGCATGAAAGATTGCATTCTTGCTCCGTATTTTCCAAAAAACAAGCTTCAAGAATATGAAGAAGTTCATAGAGTTTTTGGTTACAGCAACGTCACAAAAATGGTTCAAAACCTTGGTGAACAAGAAAGACAAAATGCCATCAATTCTATTAAATGGGAAGCCAAGATGTGGACTCAAGATCCAATCTTTGGTCCATTTGGTGCTTACAATGATGCTTGTAAGACCATTGCACATCTATGGAATCTCCTCCAACAACAACAAGAACAAGCCCATCAAAGAGTTTCAACTTCTGATCCCAACAAGTTTATGGGTCAGGCCCAAGTTTCATTACCTTTCATTAATGAAGCTTTACCAATTTCAAATAATGTCAATTGGGCACATTTTGATTCCTCTTATGTGGCTAGTAACAATGTTGTACACAATCCCAATTTTGAATATCCACATGTTAATTACTTTGGAGGTTCTTTGCAAAATGAGGAGCCAAATGTATTGAAGTGTGTTCCAAGTGGTATTGTGCAACCTTCACAATTCAATTATTTGCAAGGTGTGGCAAGTAGTTCTGGCACTAATGTGACAATGGATCAACATTTTCATTTTTGTGATGAGAATATTGTGACCAATGAAGAGATGGGAATGCAAAAAGATGGTCAAGAAAATTATGGTATTCACACAATGGCACAAAATAGAGTAAGGAGCCAAATTACAGAAATTCAGCATCCTTCTGGACACAGTAAGATATTTTCCTACTTCTGCATGTTGTTGAAAATTAATACTCCCTTCATTTGGTTTAAAAAAAAAACCCTCTTGACTAATGTATCTGGTCTATAA 876 0.363 MVNRPACAACRHQRKKCMKDCILAPYFPKNKLQEYEEVHRVFGYSNVTKMVQNLGEQERQNAINSIKWEAKMWTQDPIFGPFGAYNDACKTIAHLWNLLQQQQEQAHQRVSTSDPNKFMGQAQVSLPFINEALPISNNVNWAHFDSSYVASNNVVHNPNFEYPHVNYFGGSLQNEEPNVLKCVPSGIVQPSQFNYLQGVASSSGTNVTMDQHFHFCDENIVTNEEMGMQKDGQENYGIHTMAQNRVRSQITEIQHPSGHSKIFSYFCMLLKINTPFIWFKKKTLLTNVSGL 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00962 291 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 6 154 - -
Trre4g00962 291 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Trre4g00962 291 Pfam Lateral organ boundaries (LOB) domain 6 101 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00962 Trre-Chr4 7439787 7440662 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00962 6 102 AS2 family AT1G06280 45.361 2.72e-27 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre4g00962 LOB 8.6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00962 - - mtr:25493051 261.922