Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00944 ATGGCTTCTTTTGCTTTCTTCAGAAAACCCCTTATACTATCTTTCCATTTCATATCTCGTGTAACTTCTTCCACCGTTTCCTTCAACAACAATGCATCAACTCTTGTTTCTCTCCATAGATCCATGGCCACTTTCACAAGAACAAAGCCTCATCTTAATGTTGGCACCATTGGGCATGTAGATCATGGAAAAACCACATTAACTGCTGCCATAACAAAGGTACTAGCTGATGAAGGAAGAGCCAAGGCCATTGCTTTTGACGAAATCGACAAGGCTCCTGAGGAGAAGAAGAGAGGAATTACTATTGCTACTGCTCATGTCGAGTATGAGACCTCAAAGAGGCATTATGCCCATGTTGATTGCCCGGGACACGCAGACTATGTTAAGAACATGATTACTGGAGCTGCACAAATGGATGGTGGAATCCTTGTGGTTTCTGCTCCAGATGGTCCGATGCCTCAAACAAAGGAACATATACTCCTCGCTCGTCAGGTTGGTGTGCCATCACTGGTATGTTTTCTAAATAAAGTAGATGCTGTTGACGATCCAGAGTTACTTGAACTTGTCGAAATGGAGCTTCGCGAACTACTTAATTTCTATAAATTTCCCGGGGATGATATCCCGATTGTGAGAGGTTCAGCTCTATCTGCCTTGCAAGGGACTAATGAAGAACTTGGAAGGAAAGCTATCTTGAAACTAATGGATGCTGTCGATGAATATATTTCTGATCCTGTCCGGCAGCTTGACAAGCCTTTCTTAATGCCAATAGAAGATGTTTTCTCTATTCAGGGGCGTGGAACTGTTGTCACTGGCCGTATTGAACAAGGTACTATCAAAGTTGGTGAAGAGGTTGAAATTTTAGGACTAACAAAGAGTGAACCTTTGAAGACTACTGTAACTGGCGTAGAAATGTTCAAGAAAATATTGGATAGAGGGCAAGCTGGTGATAATGTAGGACTTCTTGTACGAGGACTAAAACGAGATGATGTGCAGAGAGGAATGGTTATCACGAAGCCTGGCGCATTGAAAACATATAAGAAGTTCGAAGCAGAGATTTATGTCCTGTCAAAAGATGAAGGTGGCCGTCATACCGCTTTTTTCTCTAACTATATGCCTCAGTTTTACCTGAGGACTGCAGACATTACTGGAAAGGTGCAGTTACCTGAAAATGTCAAGATGGTTATGCCTGGTGATAACGTGACCGCAACTTTTGAGCTGATATTACCTGTTCCTCTTGAATGCGGACAAAGATTTGCTTTGAGAGAGGGAGGTAGGACAGTTGGTGCTGGAGTTGTCTCCAAAGTGATTGCCTAG 1314 0.4285 MASFAFFRKPLILSFHFISRVTSSTVSFNNNASTLVSLHRSMATFTRTKPHLNVGTIGHVDHGKTTLTAAITKVLADEGRAKAIAFDEIDKAPEEKKRGITIATAHVEYETSKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDAVDDPELLELVEMELRELLNFYKFPGDDIPIVRGSALSALQGTNEELGRKAILKLMDAVDEYISDPVRQLDKPFLMPIEDVFSIQGRGTVVTGRIEQGTIKVGEEVEILGLTKSEPLKTTVTGVEMFKKILDRGQAGDNVGLLVRGLKRDDVQRGMVITKPGALKTYKKFEAEIYVLSKDEGGRHTAFFSNYMPQFYLRTADITGKVQLPENVKMVMPGDNVTATFELILPVPLECGQRFALREGGRTVGAGVVSKVIA 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00944 437 Pfam Elongation factor Tu C-terminal domain 342 435 IPR004160 -
Trre4g00944 437 Gene3D - 41 244 IPR027417 -
Trre4g00944 437 PRINTS GTP-binding elongation factor signature 97 105 IPR000795 GO:0003924|GO:0005525
Trre4g00944 437 PRINTS GTP-binding elongation factor signature 117 127 IPR000795 GO:0003924|GO:0005525
Trre4g00944 437 PRINTS GTP-binding elongation factor signature 170 179 IPR000795 GO:0003924|GO:0005525
Trre4g00944 437 PRINTS GTP-binding elongation factor signature 53 66 IPR000795 GO:0003924|GO:0005525
Trre4g00944 437 PRINTS GTP-binding elongation factor signature 133 144 IPR000795 GO:0003924|GO:0005525
Trre4g00944 437 Gene3D Translation factors 247 377 - -
Trre4g00944 437 PANTHER ELONGATION FACTOR TU-RELATED 41 436 - -
Trre4g00944 437 SUPERFAMILY Translation proteins 246 342 IPR009000 -
Trre4g00944 437 Gene3D Translation factors 381 436 - -
Trre4g00944 437 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 346 437 IPR009001 -
Trre4g00944 437 FunFam Elongation factor Tu 247 377 - -
Trre4g00944 437 Pfam Elongation factor Tu GTP binding domain 49 242 IPR000795 GO:0003924|GO:0005525
Trre4g00944 437 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 47 267 IPR027417 -
Trre4g00944 437 Pfam Elongation factor Tu domain 2 266 337 IPR004161 GO:0005525
Trre4g00944 437 CDD EF_Tu 50 244 IPR041709 -
Trre4g00944 437 NCBIfam elongation factor Tu 41 436 IPR004541 GO:0003746|GO:0005525|GO:0006414
Trre4g00944 437 FunFam Elongation factor Tu 40 244 - -
Trre4g00944 437 NCBIfam small GTP-binding protein domain 53 189 IPR005225 GO:0005525
Trre4g00944 437 CDD EFTU_II 252 340 IPR033720 -
Trre4g00944 437 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 49 245 IPR000795 GO:0003924|GO:0005525
Trre4g00944 437 CDD EFTU_III 343 432 - -
Trre4g00944 437 Hamap Elongation factor Tu [tuf]. 40 437 IPR004541 GO:0003746|GO:0005525|GO:0006414
Trre4g00944 437 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 90 105 IPR031157 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00944 Trre-Chr4 7208164 7211083 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00944 47 435 Eukaryotic Initiation Factors Gene Family AT5G60390 29.977 4.32e-44 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00944 K02358 - gmx:102667962 745.347