Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00938 ATGACAACACAGGCTTGTCGTATTGTCATCTATGATAGCTGTTCAGCTCAGGCTTGTGTTGTTGCAGCTCTGTATCAGATTGGATGGGTTTTCGGATCCAAATCCGGGTCCTATCTATATTCTAATTTACCGCCATTGCTGACGCCAAAGTTCAATCTCAACAACAAGCTTCCGTACCACCTTTGTACTTTACACCTCTCAATTTGTCTCCTTCCAAACCCTAATTCCACTATTTCTCTCTCAATTCCATTTTCAACCAATGCTTCAATTCCAGAATTAGGGATCATGATTGTAAAGGAGCATCCTGTTGGTACTGAACTGGTAATGAGTAATGCAATTGGGGATGATGAAATTGATTTTTCTTGTGATCCTTATATAGGGTTAGAGTTTTTTAATGCAGATGATGCACTTAAGTTTTATATATCATACGCTAATCGAATGGGGTTTAAAGTTCGGATTGGTCAGCTTTATCGATCGAGGACTAATGGATCGGTTTCTTCTCGAAGATATGTGTGTTCAAAGGAGGGACATCAGCTTAGCTCAAGAACTGGATGCCCGGCGTTCATAAGGGTACAATTAAATGATTCTGGAAAGTGGGTTGTTGATCATTTTCACAAGGATCATAACCATAGTCTTGAAAATGAAAGTGAAAATTTCGCTCCAACATTGCAGTCGAATGGTGCTGCAGCTATTGATTCTTCTACCACTGAAGTCACTCGCAGGCCGAGGAAGAAAAAGCTTGAAGTTGCCAATGATGAACCTATTTGTCCCTTTGGTGTTATTGATTTCAAGCGCCTGAGAAAGGAAGAACTTGTAGGACAGGCCAGGATCGAACCACATGTTGGTCAAGAGTTTAATACCCCTAATGAAGCCTACCAATTTTATCATGCTCATGCAGCATATTTGGGTTTTGGAATTCGAATCGGTCAATTGTTTCGGTCTAAAAATGATGGATTGATTACATCGCGACGCTTTGTGTGTTCAAAAGAAGGGTTCCAGCATCCTTCAAGAGTTGGTTGTAAGGCTTATTTAAGGATTAAGAGACAACCATTGGGAAAGTGGGTAGTCGACCGTCTTGAAAAAGATCATAATCATGATCTGGGCCTTGAAAAGGAACATAAGACAAAAAATCTTCCTGCTTCTAACATTTTGACTGAGGAGCTAAATACTGAATTGGTGAATGGCGACATATTTAGGATAGATAACTACCCTGTCTTGAGAGGAGGTAGACAAAATCACATCAGAAGTGATTGGTACAACATGCTTTTAGAAGAATCATGGAGTAGCTCTCAGGAGCTAAAAAGTTTGATGCTATGGAGTCTAAGAGAAACAGCATCTAAATACATTGATGCTGGTGCATCATCCATCGAAAAGTATAAACTTGCCTATGAGATTTTGCGAGAGGGTGGGAGAAAACTGTGTTGGCATAGGTGA 1434 0.4024 MTTQACRIVIYDSCSAQACVVAALYQIGWVFGSKSGSYLYSNLPPLLTPKFNLNNKLPYHLCTLHLSICLLPNPNSTISLSIPFSTNASIPELGIMIVKEHPVGTELVMSNAIGDDEIDFSCDPYIGLEFFNADDALKFYISYANRMGFKVRIGQLYRSRTNGSVSSRRYVCSKEGHQLSSRTGCPAFIRVQLNDSGKWVVDHFHKDHNHSLENESENFAPTLQSNGAAAIDSSTTEVTRRPRKKKLEVANDEPICPFGVIDFKRLRKEELVGQARIEPHVGQEFNTPNEAYQFYHAHAAYLGFGIRIGQLFRSKNDGLITSRRFVCSKEGFQHPSRVGCKAYLRIKRQPLGKWVVDRLEKDHNHDLGLEKEHKTKNLPASNILTEELNTELVNGDIFRIDNYPVLRGGRQNHIRSDWYNMLLEESWSSSQELKSLMLWSLRETASKYIDAGASSIEKYKLAYEILREGGRKLCWHR 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00938 477 Pfam FAR1 DNA-binding domain 293 367 IPR004330 -
Trre4g00938 477 Pfam FAR1 DNA-binding domain 138 212 IPR004330 -
Trre4g00938 477 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 107 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00938 Trre-Chr4 7145721 7149593 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre4g00938 FAR1 1.6e-18 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00938 - - mtr:112419201 607.831