Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00930 ATGGGTTGTGTTCATGGTAAGTGTTGTAGTCGTTATCCCGCACCATCAATTGGTGGCTCTAGGGACTATAGAGAAATTGGTTCTTACAGTGCACAAAGGAAGCACATGCTCACACAAAGATCACTGCATTTTGTTGATGTTCCTTCTCACAACTTCACTTTTGAATACTCTGTTCTTACTCAGAGAGGTTACTACCCTGACTCACCTGATAAAGAAAATCAAGATTGTTACTGTGTTAGGACAACATTGCAAGGTAATCCAAGTGTTCATTTCTTTGGTGTTTATGATGGACATGGTGAATTTGGTGGAAGGTGTTCCAATTTTGTTAAGGATAGGTTGGTTGAAAAATTGTCAAATGATTCTGCATTGTTGGAGGATCCGGTTAAGGCTTATAATTCGGCATTTTTAGCTACAAATGATGAGTTGCACAAGAGTGAGATTGATGATTGTATGAGTGGTACTACCGCGATTACGGTGTTGGTGATAGGAGACACACTTTATGTTGCGAATGTTGGTGATTCGAGGGCCGTGTTGGCTGTTAAGGATGGGAATAGAATTGTTGCTGAGGATTTGTCTTCTGATCAGACACCTTTTAGGAGAGATGAGTATGAGAGAGTGAAGCTTTGTGGTGCTAGGGTGTTGAGTGTTGACCAGGTTGAAGGGCATAAGGATCCGGATATTCAAACTTGGGGTGATGAAGAGAGTCAGGGTGATGATCCTCCGCGATTGTGGGTTCAGAATGGGATGATTCCTGGAGCTGCTTTTACAAGGAGTGTAGGAGATAGTTTGGGTGAGTCTATTGGTGTTATTGCGGTTCCAGAGGTTTTAACGGTTAAGCTTACACCAAATCATCTTTTCTTTGTTGTTGCGAGTGATGGTGTATTTGAGTTCCTATCAAGCCAAACTGTTGTTGATATGGCTTCAAGTTATTCAGATCCGCGTGATGCATGTGCTGCCATTGCTGGAGAGTCTTACAAATTATGGTTGGAACATGAGGGCCGAACAGATGATATAACAATTATCATTGTTCAGATCAAAGGCCTGTCTAATTCAGGTACATCTGAATACGGATCAGGAGAGATCAACGTCAGTACTGTAACGAAAGCCAAAAAGGGAAAGGGAACTTCTGGTATATCTGCCTCTACTGGTGGAGATGTTCATCGTGCCATGAGGAGCGGTTTATCCGATTCTATGCCCTGTCAGCATGTGGTTTCATCAAGAAGCCAAGCCATAGTGGTTCCCTCTCCCACATGTCAAAGTCCAGTTGAATTGGTAGCAGGTTTAAGGTGCATTCTATTAGCAGCTGAAGGACTTCTCTTGGATTTGTAG 1329 0.4266 MGCVHGKCCSRYPAPSIGGSRDYREIGSYSAQRKHMLTQRSLHFVDVPSHNFTFEYSVLTQRGYYPDSPDKENQDCYCVRTTLQGNPSVHFFGVYDGHGEFGGRCSNFVKDRLVEKLSNDSALLEDPVKAYNSAFLATNDELHKSEIDDCMSGTTAITVLVIGDTLYVANVGDSRAVLAVKDGNRIVAEDLSSDQTPFRRDEYERVKLCGARVLSVDQVEGHKDPDIQTWGDEESQGDDPPRLWVQNGMIPGAAFTRSVGDSLGESIGVIAVPEVLTVKLTPNHLFFVVASDGVFEFLSSQTVVDMASSYSDPRDACAAIAGESYKLWLEHEGRTDDITIIIVQIKGLSNSGTSEYGSGEINVSTVTKAKKGKGTSGISASTGGDVHRAMRSGLSDSMPCQHVVSSRSQAIVVPSPTCQSPVELVAGLRCILLAAEGLLLDL 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00930 442 SMART PP2C_4 55 343 IPR001932 -
Trre4g00930 442 CDD PP2Cc 71 345 IPR001932 -
Trre4g00930 442 ProSiteProfiles PPM-type phosphatase domain profile. 55 345 IPR001932 -
Trre4g00930 442 SUPERFAMILY PP2C-like 41 347 IPR036457 -
Trre4g00930 442 Gene3D - 42 347 IPR036457 -
Trre4g00930 442 ProSitePatterns PPM-type phosphatase domain signature. 91 99 IPR000222 GO:0043169
Trre4g00930 442 FunFam Phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 50 347 - -
Trre4g00930 442 Pfam Protein phosphatase 2C 84 320 IPR001932 -
Trre4g00930 442 PANTHER PROTEIN PHOSPHATASE 71 344 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00930 Trre-Chr4 7095466 7098320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00930 1 350 PP2C-type Phosphatase Gene Family AT3G06270 72.857 0.0 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00930 - - gsj:114373061 735.717