Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00917 ATGAGCGATGAAGCACAAGAACCACAACCACCCCCACCACCGCAACCTTCTTCCTCAAGCAATGAAGTTCAGAAGCCAGAAAGAAAACAAATGGATAAAAGGGAGACTCTTTCAAGAGCCAGACGACCACGACCTGGATTTTCCGATTCTTTTTCTAGTGTTGACTTTGCAAATTTAGAGATAGATGAAGGAAACCAGTCTGATCAGTATTCTCCAAGAAGTCAAGAATCTGATACACCAAGTTCAAGAGCAAGCACTTCTGATTCTGAGGGATGTCCAAGAGGAAATCTTACTAATAATCAGTGGCGTGGTTTCTTTAAACTACTGAAGAAAGGATCGGAAAAGCCTTTTCATACCTTGAAAGGATCGGAAAAGCCTTTTCATACCTTTCATCCATTGAAAAATGTTCCAAAACTTACTAGAAGAAAAAGCAAAAGAATTAGAGAGGATCTTATCCCTTCTCTCAATTCTCCAGCTCTTCAGTCTTCTTTTGACGCCGAGTTTTGTTGCTTCAAATCTTCGTGGAAGAATTTCACTATCTCAGAAATCCAAGCTGCAACCAATAATTTTAGCCATGATAATTTGCTTGGTGAGGGAGGCTATGCTGAGGTTTACTTAGGTAAATTGGAAGATGGAAACTTTGTTGCTATTAAAAAGTTGACAAAAGGTAGCCAAGAAGAAATGACTGCAGATTTTTTGTCTGAGCTTGGAATTATAGTTCATGTGGATCACCCCAATATTGCTAGATTGATTGGATATGGTGTTGAAGGTGGAATGTTTCTTGTTCTTCAATTGTCTCCTCATGGAAGCTTGTCGTCCTTACTTTATGGACCTAGAGAGAAATTGAATTGGAGCCTTAGATATAAGATTGTTTTGGGGACTGCTGAGGGTCTTCGCTATCTGCACGAGGGATGTCAAAGAAGGATTATTCACAAAGATATCAAGGCTTCTAATATTCTCCTCTCAGAGGATTTTGAGCCTCAGATATCTGATTTTGGGCTCGCAAAGTGGTTACCTGATCAATGGACTCACCATACTGTCTCCAAAGTGGAAGGCACATTTGGCTACCTTCCTCCTGAATTCTTCATGCATGGTATAGTAGATGAAAAGACTGATGTATATGCCTATGGTGTACTATTATTGGAGCTTATTACCGGAAGACAAGCTTTGGATAGTTCACAAAAAAGTCTAGTGATGTGGGCAAAACCTTTGCTATCTAGTAATAACATCAAAGAGCTAGTTGATCCAATTTTGCATGGTGCTTATGATGAAGAACAGATGAAACTTGTTTTACAAATACTAAGAGGTGAAGAAGAAAGCAAGAAAATCTTGAAAGATAGACAAAACTCGAAACTTCATAGGACATACTCTGAAGAACTATTTGATGCAGAAGATTACAACTCAACAAAGTTTTTAAGCGAGAGGGATCGACACATGGAGACAATTTTAGGCTCTAGTAGTCTAAATTAG 1470 0.3891 MSDEAQEPQPPPPPQPSSSSNEVQKPERKQMDKRETLSRARRPRPGFSDSFSSVDFANLEIDEGNQSDQYSPRSQESDTPSSRASTSDSEGCPRGNLTNNQWRGFFKLLKKGSEKPFHTLKGSEKPFHTFHPLKNVPKLTRRKSKRIREDLIPSLNSPALQSSFDAEFCCFKSSWKNFTISEIQAATNNFSHDNLLGEGGYAEVYLGKLEDGNFVAIKKLTKGSQEEMTADFLSELGIIVHVDHPNIARLIGYGVEGGMFLVLQLSPHGSLSSLLYGPREKLNWSLRYKIVLGTAEGLRYLHEGCQRRIIHKDIKASNILLSEDFEPQISDFGLAKWLPDQWTHHTVSKVEGTFGYLPPEFFMHGIVDEKTDVYAYGVLLLELITGRQALDSSQKSLVMWAKPLLSSNNIKELVDPILHGAYDEEQMKLVLQILRGEEESKKILKDRQNSKLHRTYSEELFDAEDYNSTKFLSERDRHMETILGSSSLN 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00917 489 MobiDBLite consensus disorder prediction 1 98 - -
Trre4g00917 489 ProSitePatterns Serine/Threonine protein kinases active-site signature. 309 321 IPR008271 GO:0004672|GO:0006468
Trre4g00917 489 PANTHER OS08G0249100 PROTEIN 54 468 IPR046958 -
Trre4g00917 489 Gene3D Phosphorylase Kinase; domain 1 163 264 - -
Trre4g00917 489 SUPERFAMILY Protein kinase-like (PK-like) 175 396 IPR011009 -
Trre4g00917 489 ProSitePatterns Protein kinases ATP-binding region signature. 196 219 IPR017441 GO:0005524
Trre4g00917 489 MobiDBLite consensus disorder prediction 1 19 - -
Trre4g00917 489 SMART serkin_6 190 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g00917 489 MobiDBLite consensus disorder prediction 25 42 - -
Trre4g00917 489 MobiDBLite consensus disorder prediction 51 98 - -
Trre4g00917 489 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 267 447 - -
Trre4g00917 489 Gene3D Transferase(Phosphotransferase) domain 1 267 455 - -
Trre4g00917 489 ProSiteProfiles Protein kinase domain profile. 190 456 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g00917 489 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK2 160 264 - -
Trre4g00917 489 Pfam Protein kinase domain 192 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00917 Trre-Chr4 7003964 7007540 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00917 161 433 Receptor kinase-like Gene Family AT1G53420 40.925 2.61e-64 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Trre4g00917 Pkinase 1.7e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00917 - - gmx:102670300 754.207