Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00908 ATGGATTCCCAATCTCAATCCCAATCCCAACCAATTCTCCCTCCGATGGAACCTCCCGAAGATCTCTCCACCGTTTGGGACCTCTCTTATCTCCTCGACTTCAATCTCGACGACGAAATTCCTCAACTCCCTCTTCTTCCAAACCCTAACCCTAATCCCAATCCTAATCTTAATCCTAATGATGATAATAATGATAAGATCCGAAAACGTGACCCGAGATTAACTTGCTCCAACTTTCTCGCGGGTCATGTACCATGTGCATGTCCTGAACTCGATGCTTTGCTTGAAGATAAAGGTTTACCGGGAAAGAAACGTGCTCGGACGGTTCGTGCATCTACATCGGCACGGTGTCAGGTTCCTGGTTGTGAAGTTGATATCTCTGAACTCAAAGGCTATCACCGACGACATAGGGTTTGTTTACGATGTGCTAATGCCGTTACTGTTGTTCTTGACGGTGAAGCCAAAAGATACTGTCAACAGTGTGGAAAGTTTCATGTTTTATCGGATTTCGATGAAGGGAAGCGAAGTTGTAGACGAAAATTGGAGCGTCATAATAATAGGAGGCGGAGAAAGCCTGCTGATTCTGTTGCTGGAGTTGATAATGAACTTCAAACTGTTACTCAAAATGATGATTCCAATTGTGATGGAGAAGCAGGAATAGATTATTCGAATTTGAGTAGTGAGAATATTGAAAAAAGAGTGTCACCGGATCATGAAGAAGAACCGATTGCTACTGGGTCCTCAACTCCAGAGACCCAGAATATTAATGGTGATGGTGTTGTGTCCTTTGCTGCTTCTGCTGAAGAACAAGTGAATATTGGAAAAGATGTTTCCAATCTTTCCAAGTCGCCTTCATTTTGTGACAATAAGAGTGACTATTCGTCTATGTGCCAAACAGGTCGGGTTTCTTTTAAGCTTTACGATTGGAATCCTGCGGAATTTCCCAGAAGGCTGCGGCTTCAAATATTCCAATGGTTGGCAAGTATGCCTGTGGAGCTGGAGGGATATATCCGCCCTGGGTGTACAATTCTTACAGTTTTTATTGCAATGCCAAATGTTATGTGGATAAATTTACTCAAAGATCCTATGTATTATGTGCGCGAACTTGTTGCTCCCAGAAACATGCTATCTGGAAGAGGCACCGCTCTAATTCATCTGAATGACATGATTTTCAGTGTTATGAAAGATGGAAGTTCTGTGATGAAAGTCGAGGTAAACAAGCAGGCACCTAAGCTTCACTATATTCATCCCACATGCTTTGAAGCAGGAAAACCCATGGAGTTTTTTGCTTGTGGAAGTAACTTGCTGCAGCCTAAGTTTCGGCTTCTTGTATCTTTTTATGGGAAGTATCTGAAGTATGAGTATTGCATTCAGTCTCCACATAACTGGGCTGAAGACAATATTTCTTGTGCTTTTGATAATCAGTTATATAAGATATGTGTCCCTCCTATTGAGGAAAATCTCCTGGGGCCTGCATTTATTGAGGTTGAGAATGAGTCTGGTTTATCAAACTTCATTCCTGTACTTATTGGGGATAAAGAAGTTTGCACTGAAATGAAGATATTGCAACAAAAACTAGATGTCTCTCTCCTTTCTAAAAAGTTTCGGTCTGCATCTGGTGGTTCTGTTTGTAGCTCATGTGAAGCTTTTGTACAAATTCACTCATCGTCATCAGACTTGCTTGTAGATATAGCATGGTTACTTAAGGATTCTACTTCAGAAAATTTTGAGAGAATACTATCTGCTTCACAGATTCAAAGATATTGCTATTTGTTGGATTTTCTAATAAGCAATGATTCAACTATCATTTTGGGTAAAATATTGCCAAATTTGATAATTTTAACAGAAAGCATGAAATCCAATATAAGTGATGTTGACATGGTTCAACTGCTGAAGTGCATGCATAATGCCAAAGAAGCTATTTGTCAGAAAGGTGGAGGTATAGTTTTGCACTCCAAAATGGAAAGTTTTACACCTGGTCAACGCTGTTCCCTAGATGACAAGTTATCGGTTGTTGAAGCTAATAGTCAGGGTATCCAGTTTAGAACCGATGCAGAGTTGGGAGTTCTGAGAAGTCTCGTGTCTGATGAAAAAAGTCAGAAGATACCGCTTTTGAAAAGGGATATTATAATGAATGTGGAAGAGTTTCCCAGAAGATGTGACCGTCGAAATCTTACCAGGGGATTCTTGAGCTCTCGACCAACTATTTTTGTCCTTGTTTCAGTTGTTGTTTGTCTTATGGTATGTGTATCCATATTTCATCATGGGAGGGTGAACGAGTTAGCAGTGTCCATTAGAAGGTGTTTGTTTAACCATTAA 2319 0.4041 MDSQSQSQSQPILPPMEPPEDLSTVWDLSYLLDFNLDDEIPQLPLLPNPNPNPNPNLNPNDDNNDKIRKRDPRLTCSNFLAGHVPCACPELDALLEDKGLPGKKRARTVRASTSARCQVPGCEVDISELKGYHRRHRVCLRCANAVTVVLDGEAKRYCQQCGKFHVLSDFDEGKRSCRRKLERHNNRRRRKPADSVAGVDNELQTVTQNDDSNCDGEAGIDYSNLSSENIEKRVSPDHEEEPIATGSSTPETQNINGDGVVSFAASAEEQVNIGKDVSNLSKSPSFCDNKSDYSSMCQTGRVSFKLYDWNPAEFPRRLRLQIFQWLASMPVELEGYIRPGCTILTVFIAMPNVMWINLLKDPMYYVRELVAPRNMLSGRGTALIHLNDMIFSVMKDGSSVMKVEVNKQAPKLHYIHPTCFEAGKPMEFFACGSNLLQPKFRLLVSFYGKYLKYEYCIQSPHNWAEDNISCAFDNQLYKICVPPIEENLLGPAFIEVENESGLSNFIPVLIGDKEVCTEMKILQQKLDVSLLSKKFRSASGGSVCSSCEAFVQIHSSSSDLLVDIAWLLKDSTSENFERILSASQIQRYCYLLDFLISNDSTIILGKILPNLIILTESMKSNISDVDMVQLLKCMHNAKEAICQKGGGIVLHSKMESFTPGQRCSLDDKLSVVEANSQGIQFRTDAELGVLRSLVSDEKSQKIPLLKRDIIMNVEEFPRRCDRRNLTRGFLSSRPTIFVLVSVVVCLMVCVSIFHHGRVNELAVSIRRCLFNH 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00908 772 MobiDBLite consensus disorder prediction 1 20 - -
Trre4g00908 772 MobiDBLite consensus disorder prediction 42 69 - -
Trre4g00908 772 MobiDBLite consensus disorder prediction 206 257 - -
Trre4g00908 772 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 66 594 IPR044817 GO:0003677
Trre4g00908 772 MobiDBLite consensus disorder prediction 206 230 - -
Trre4g00908 772 Gene3D - 108 178 IPR036893 GO:0003677|GO:0005634
Trre4g00908 772 SUPERFAMILY SBT domain 115 195 IPR036893 GO:0003677|GO:0005634
Trre4g00908 772 ProSiteProfiles Zinc finger SBP-type profile. 114 191 IPR004333 GO:0003677
Trre4g00908 772 Pfam SBP domain 117 191 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00908 Trre-Chr4 6943337 6949854 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00908 11 766 SBP-box Gene Family AT5G18830 45.707 0.0 655
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Trre4g00908 SBP 1.3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00908 - - aprc:113863838 1072.38