Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00904 ATGCATACGGTTGTTTTATTATGCGACGAGAATTTTAACCAGGATATAGTGACTGAGGCCGGGCTAAACAAAGAAATCTCAGCTAATGGATCCAGCGGAAAGCGTCCTGATATTTCACTTCAAGTTCCACCTAGACCTTTAGGGTTTGGAAGCACATGTGGTGGAAAGGTTCTGGACCATTCTCAAAGTTTCTCTAAAGGGATATCATCACCAAAAGATTTTTTGCGGGTTTTGAGCTTCAAAAGAAAAGCGAATGTAGCAGATGGTGAAAGAAGCAGCCTCCTTAATTCAGACTCTAAGACAGCTGCAGACAGTACTAATAAGGCTCCCATATCTGAAATTTCATGGTCAAGATGTAATTCTCTTCCTGTTTCACATGCGCCAAATCTGTCCCCTTCAGTTGCTACGCCCGTGTCTGCAAGGACATATAACGAACAACAGATTAAGCCACATAAAGATGGTAAATCTAAGGTTTCAAGGTGCCTAACAATACCTGCACGAAATGTTGTTATTGTAAGATCTGTCTCTTTTAATACCCGCGCCGACCAAGAACAGCAAGATACAAATGACGATCAAATAACTCCTGTGCCAGTAGAAGTTACCGAGGATGAAGAAATTCCTGAAGAGGAAGCGGTCTGCAGGATATGTCTTGATGTGTGCGATGAAAGAAATACCTTTAAAATGGAATGCAGTTGCAAAGGTGACCTGAGATTGGTGCATGAAGAATGTTTAATCAAATGGTTCACCACAAAAGGAACCAAGAAATGTGAAATATGCGGGAAAGAGGTTCAGAATTTACCTGTAACCTTGCTCCGCATAACCAGCACTGTTCAACAAAGAAACAGACAGGATCAGCACAGCTTAAGTTCAGAGGCAATAAGTGCTTGGCAAGACTTCGTGGTGCTTGTCCTGATAAGCACAATATGCTATTTTTTCTTCCTTGAACAGCTACTGCTTCCTGATTTGAAGACTCAAGCTATCATTATATCAGCACCATTTTCCTTTACCTTAGGCCTCCTGGCATCTGTTTTTGCAATCGTCCTTGCAATCAGAGAGTATATATGGACATATGCCGCTCTTGAGTTTGCACTTGTGGCTGTAACTGTGCATCTCTTTTATACTTTGTTGCATTTGGCGCCAATTTATTCGATACTACTTTCATCGATTTTGGGTTTTGGAATTGCTATGGGAATCAACTATATGTATATCCAGTATGTGACATGGAGACTCCAGGTCTCTATCAATGATAGCCCAGTATGA 1260 0.4127 MHTVVLLCDENFNQDIVTEAGLNKEISANGSSGKRPDISLQVPPRPLGFGSTCGGKVLDHSQSFSKGISSPKDFLRVLSFKRKANVADGERSSLLNSDSKTAADSTNKAPISEISWSRCNSLPVSHAPNLSPSVATPVSARTYNEQQIKPHKDGKSKVSRCLTIPARNVVIVRSVSFNTRADQEQQDTNDDQITPVPVEVTEDEEIPEEEAVCRICLDVCDERNTFKMECSCKGDLRLVHEECLIKWFTTKGTKKCEICGKEVQNLPVTLLRITSTVQQRNRQDQHSLSSEAISAWQDFVVLVLISTICYFFFLEQLLLPDLKTQAIIISAPFSFTLGLLASVFAIVLAIREYIWTYAALEFALVAVTVHLFYTLLHLAPIYSILLSSILGFGIAMGINYMYIQYVTWRLQVSINDSPV 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00904 419 ProSiteProfiles Zinc finger RING-CH-type profile. 205 266 IPR011016 GO:0008270
Trre4g00904 419 MobiDBLite consensus disorder prediction 89 109 - -
Trre4g00904 419 CDD RING_CH-C4HC3_MARCH 213 260 - -
Trre4g00904 419 SMART ringv_2 212 260 IPR011016 GO:0008270
Trre4g00904 419 SUPERFAMILY RING/U-box 209 263 - -
Trre4g00904 419 PANTHER OS02G0165000 PROTEIN 60 413 - -
Trre4g00904 419 Pfam RING-variant domain 213 259 IPR011016 GO:0008270
Trre4g00904 419 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 198 267 IPR013083 -
Trre4g00904 419 MobiDBLite consensus disorder prediction 90 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00904 Trre-Chr4 6889431 6893072 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00904 199 318 C3H Transcription Factor Family AT2G37950 30.000 1.84e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00904 - - gmx:100527094 622.083