Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00903 ATGCAAGAACATCATCAACCACTATCCATTCATGAAGCTCCCAAGATTTCTCACCAGACTGAGGCCGGGCTAAACAAAGAAATCTCAGCTAATGGATCCAGCGGAAAGCGTCCTGATATTTCACTTCAAGTTCCACCTAGACCTTTAGGGTTTGGAAGCACATGTGGTGGAAAGGTTCTGGACCATTCTCAAAGTTTCTCTAAAGGGATATCATCACCAAAAGATTTTTTGCGGGTTTTGAGCTTCAAAAGAAAAGCGAATGTAGCAGATGGTGAAAGAAGCAGCCTCCTTAATTCAGACTCTAAGACAGCTGCAGACAGTACTAATAAGGCTCCCATATCTGAAATTTCATGGTCAAGATGTAATTCTCTTCCTGTTTCACATGCGCCAAATCTGTCCCCTTCAGTTGCTACGCCCGTGTCTGCAAGGACATATAACGAACAACAGATTAAGCCACATAAAGATGGTAAATCTAAGGTTTCAAGGTGCCTAACAATACCTGCACGAAATGTTGTTATTGTAAGATCTGTCTCTTTTAATACCCGCGCCGACCAAGAACAGCAAGATACAAATGACGATCAAATAACTCCTGTGCCAGTAGAAGTTACCGAGGATGAAGAAATTCCTGAAGAGGAAGCGGTCTGCAGGATATGTCTTGATGTGTGCGATGAAAGAAATACCTTTAAAATGGAATGCAGTTGCAAAGGTGACCTGAGATTGGTGCATGAAGAATGTTTAATCAAATGGTTCACCACAAAAGGAACCAAGAAATGTGAAATATGCGGGAAAGAGGTTCAGAATTTACCTGTAACCTTGCTCCGCATAACCAGCACTGTTCAACAAAGAAACAGACAGGATCAGCACAGCTTAAGTTCAGAGGCAATAAGTGCTTGGCAAGACTTCGTGGTGCTTGTCCTGATAAGCACAATATGCTATTTTTTCTTCCTTGAACAGCTACTGCTTCCTGATTTGAAGACTCAAGCTATCATTATATCAGCACCATTTTCCTTTACCTTAGGCCTCCTGGCATCTGTTTTTGCAATCGTCCTTGCAATCAGAGAGTATATATGGACATATGCCGCTCTTGAGTTTGCACTTGTGGCTGTAACTGTGCATCTCTTTTATACTTTGTTGCATTTGGCGCCAATTTATTCGATACTACTTTCATCGATTTTGGGTTTTGGAATTGCTATGGGAATCAACTATATGTATATCCAGTATGTGACATGGAGACTCCAGGTCTCTATCAATGATAGCCCAGTATGA 1266 0.4155 MQEHHQPLSIHEAPKISHQTEAGLNKEISANGSSGKRPDISLQVPPRPLGFGSTCGGKVLDHSQSFSKGISSPKDFLRVLSFKRKANVADGERSSLLNSDSKTAADSTNKAPISEISWSRCNSLPVSHAPNLSPSVATPVSARTYNEQQIKPHKDGKSKVSRCLTIPARNVVIVRSVSFNTRADQEQQDTNDDQITPVPVEVTEDEEIPEEEAVCRICLDVCDERNTFKMECSCKGDLRLVHEECLIKWFTTKGTKKCEICGKEVQNLPVTLLRITSTVQQRNRQDQHSLSSEAISAWQDFVVLVLISTICYFFFLEQLLLPDLKTQAIIISAPFSFTLGLLASVFAIVLAIREYIWTYAALEFALVAVTVHLFYTLLHLAPIYSILLSSILGFGIAMGINYMYIQYVTWRLQVSINDSPV 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00903 421 SMART ringv_2 214 262 IPR011016 GO:0008270
Trre4g00903 421 CDD RING_CH-C4HC3_MARCH 215 262 - -
Trre4g00903 421 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 269 IPR013083 -
Trre4g00903 421 MobiDBLite consensus disorder prediction 1 45 - -
Trre4g00903 421 MobiDBLite consensus disorder prediction 90 111 - -
Trre4g00903 421 MobiDBLite consensus disorder prediction 22 38 - -
Trre4g00903 421 SUPERFAMILY RING/U-box 211 265 - -
Trre4g00903 421 ProSiteProfiles Zinc finger RING-CH-type profile. 207 268 IPR011016 GO:0008270
Trre4g00903 421 PANTHER OS02G0165000 PROTEIN 17 415 - -
Trre4g00903 421 Pfam RING-variant domain 215 261 IPR011016 GO:0008270
Trre4g00903 421 MobiDBLite consensus disorder prediction 92 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00903 Trre-Chr4 6889431 6893556 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00903 201 320 C3H Transcription Factor Family AT2G37950 30.000 1.50e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00903 - - gmx:100527094 634.795