Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00900 ATGAACCAGTACCACATCTACGAAGCAATTGGTCGCGGAAGATACTCGACTGTGTACAAAGGTAGAAAGAAAAAGACGATCGAGTATTTCGCCATCAAAAGCGTCGATAAATCTCAGAAAACAAAGGTTCTTCAAGAAGTTAGGATTCTTCATACTTTAGATCACCAAAATGTGCTCAAGTTTTATTCATGGTATGAAACTTCTGCTCACTTATGGTTGGTTTTGGAGTATTGTGTTGGTGGGGATCTACTTTCCATATTACGGCAGGATAGTCAACTTCCTGAAGATTCTGTTAATGATCTTGCTTGTTACCTCATGAGAGCTTTGCAGTATTTACATTCAAATGGAATAATTTACTGTGACCTGAAACCATCAAATATCCTACTAGATGAAAATGGATGTGCAAAGCTTTGTGATTTCGGATTGGCAAGAAAGTTAAAAGAGATATCAAAAGTTCCTTCTTCCTCGTTGCCTCAAGCAAAACGGGGAACACCCTCTTACATGGCTCCGGAGCTTTTCGAAGATGGCGGAGTCCATTCTTATGCTTCCGATTTCTGGGCTCTAGGTTGTGTACTATATGAATGTTATGCCGGGAGGCCTCCTTTTGTGGGAAGAGAATTCACTCAGCTTGTGAAATCCATCATCTCAGACCCGACTCCACCTCTCCCTGGCAATCCAAGTCGACCTTTTGTCAATTTAATAAATTCTCTTTTGGTCAAAGATCCAGCTGAAAGAATACAGTGGTCTGAGCTTTGTGGGCATGCCTTTTGGAAAACCAAATTCACTCCAGTGCCTCTTCCTCCTCAACCTGCGTTTGATGACATGATAGAGCTACATGCTAAACCATGCTTATCAGAACATAATGGAGATAAGTCTTCTCATAACAGAACCCCTCCCAAATATCGTGAAAAAGACGTGAAAGGGGTGCTAAAGAAAGATGAAAACTCTGGTTTAGCATCAAGAGGCATTGAGACACCAACAAGAGCAACACCAAATAGTCACAGAACTCAGACAAAGGGTTCTGGTAGAACACTGCAGAAAGATCCTTCCAATATTAAAAAAGGTTTGAATCTTTTGAGAATGTCAAGAATAGCAAAATCAAATTTACAAAAAGAAAATGAGAAAGAAAACTATCGACGCCCCTTGCCCAATGGCTCTGAGAAGGATGCCGATGTTAAAATTGAGAATACTGACATGGAACTGGATTTTAATGAGAATAGTGAAGAAGATGCACTTGAAGAAACTGATGGTTCTGAACATACACCTTCTGTGCCCAGTGCAAAAATGGAGAATAATTTGCAGAATCAAGGAAAAGCAGAGGACACTGAAAATGATACACACCAGTTGGACACTCCATCTGTGACTACTCCTGCCTCAGTTGATTCGAGGTCATTTGATCACGAGTCAACTCCTGACCGTTCTGACATATCTGCTATTTCTCCAAGTGTGAGCCCTCTAGTGAAAAAACAGAGGCTTAAAGAAGACTTAGGATCTGGCCTCGACTCTGATTCTTCTACGTCTAACGACTTCTCCCAGGTTATTTGGCACCCATCTGATCTCTCAGTCAGACCTGTAATGCCCAGCAGAAAAGTTGACAAAGCCTCAGAAGCCATTCCTTCACTTCCTTTTGAGGCATTGCAAGCACCTGATTTTGTCAAGATGCCTAAAGAGCAATTGGAGGCAGTCCAAAACCGAATTATAGGCATCTTGAACGGGAGTACCAGCATCGGAGACAAACAGAATGTGGTTAGGTACCTTGAGATGTTGAGCAGTAATGCTGATGCAGCCAATATCTTGACCAATGGGCCAATTATGCTCATTCTCGTAAAGTTGCTACGTCAATCCAAGGCATCAGCTTTACGTGTTCAACTTGCTTCACTGATTGGTCTGTTGATTAGACATTCTACTTTTGTTGATGACAGTTTGGCTAATTCTGGAATTCTAGGTTCATTGACGGATGGCCTTAGGGACAGACACGAAAAAGTGAGGAGATTTTCTATGGCTGCTTTGGGTGAGTTGCTATTTTATATATCCACCCAAAGTGCGGACTCTAAGGATAACCCTCCGCTTGAATCTCCCTCAAAGGACAATAGGACTGCGCATGGTTGGCAGGTTCCAAATTCATTAATTTCCTTGGTGTCATCGATATTAAGGAAAGGGGAAGATGATATAACTCAATTGTATGCATTAAGAACCATTGAGAATATTTGCAGTCAAGGAGGGGTCTGGGTGGGACGTTTTACCAGTCAAGATGTTATTAATAATCTCTGTTATATCTATAGAGCGACAGGGAAACAGGAAAGCATGAGGCTTACTGCAGGATCATGTTTGGTGCGCTTAGTTCGTTTTAATCCTTCTTGCATTCAGTCTGTTGTAGAGAAACTCTCTTTCAAGGACCTAGCTTCTGCTTTTATCAAAGGAAGTCCACGAGAGCAGCAAATCAGTTTAAATCTTCTTAACATGGCAATGCTTGGAAGTCATATGTTCACAAATGTTGGAAGATACCTTATACAACTTGCAGAGGATAAGAATCTGATACCCAGTCTTTTGGCTCTTGTTGAGCAGGGTAGTGAAGTTTTAAAAGGAAAAGCACTTGTCTTTGTGGCTCTCCTCTGCAAGCATGGTAGGAGGTGGCTTCCCCAGTTCTTTTGTAGCCATAAGTTACTTTCAGTGGTAGATAGGCTGGGAAAAGAGAAGGATGCCTTTGTGCGGCAGTGTTTAGATGCATTTCTGCATATCGTGGCATCTACTATTCCAGGTTTACTGGATATAATAACCGGGGATATCCAGCAAATGATGGGAGGAAGGCGGCATGGACATATCTCTTCCCTTACCAGCAGGTCTGCTCCAAAATCCAACATTCATTTGTTTCCTGTGGTCCTTCATCTTCTTGAAAGTTCAGCTTTTAAGCACAAAGTGGCGACACTTCCAGTACTACGGCAGTTGGCAAATCTGATTAAACTCGTGGAGGCACCATTTCAGGGAAGAGATGACTTCCAAATAACCCTTCTTCGAATTTTAGAGTCTCTCACAGAGGAATCTTCTGTGATCCTTGCCAATCCTGACATTTTCATTCGTGAAATCCTCCCTAGTTTGACAGTTCTCTACAAGGGTAACAAGGATGGTGATGCCAGATTTTTGTGTCTTAAAATCTTTTTTGATGTGATGATTATCCTCTTGAGTGAACCAATTGAAGAAGAGCAAAGATTGAATGATCTGAAATACGTATCAAATACACATTTTCTTCCTCTCTACCCGACCTTGATCGAAGATGAAGATCCTATTCCTATCTTTGCACAGAAGCTTCTTGTCATGCTACTAGAGTTCAGTTTTATTTCAATTCCAGACATTCTACATCTGAAGACAATTTCACAATGCTTTGAGTTCTTGCTTGGTGATCTGTCAAATGCAAATGTGAATAATGTTAAGTTGTGTCTTGCTCTGGCTTCTGCTCTTGAAATGGAGTCCAAGTTACTCTCACAATTGAAAGTTGTTAGGAGGATTGGCAACTTTCTTGAGTTTGTATGTGCAAAGGGTATGGAAGATTTGCTGGAGCCAACTCTTGGACTGTGTAGGGCCTTTCTAGCACGTTCAGTCAGCTGTGCAAAAGGCTTCAGCCACACAACAGAACCGACTCTCTTAGGTGACTGTCCTCCTGAGGTAAGTGGCGCTGTTGATCCCCAGCAATGCATAAGAGATATAACAGACTTTGGAAGCAACGTTGGTGTCTTCCTAGAGTTGAGTGCATCTAGAGAGACTAGTGTTGCTGATATAGCTTCTCAGTGTGTGGTTTTACTGCTCAAGGCTGCTCCTAGAGAAGCTACCACTGGTCTACTAACAAATCTCCCTAAGGTCACTGTGATCCTAGAATCCTGGAATAAAGGAACCCCTCACTTGACGGTGCAGAGAATGCTTCATGCTTTAGGTTATGCATGCAAGCAGTACTTATTGCATGCAATGATATTATCAATATCAATACCAGAGATTACAAGAATTGAAGTGATAGTTTCAGAACTCAAGAGTTCAACTGTGCCTGCTTTAGCCAAAACTGCTGGTTTGGCAGCCTTGGAGTTGCAGCGGTTACCTCGCTGCATTTGA 4098 0.4192 MNQYHIYEAIGRGRYSTVYKGRKKKTIEYFAIKSVDKSQKTKVLQEVRILHTLDHQNVLKFYSWYETSAHLWLVLEYCVGGDLLSILRQDSQLPEDSVNDLACYLMRALQYLHSNGIIYCDLKPSNILLDENGCAKLCDFGLARKLKEISKVPSSSLPQAKRGTPSYMAPELFEDGGVHSYASDFWALGCVLYECYAGRPPFVGREFTQLVKSIISDPTPPLPGNPSRPFVNLINSLLVKDPAERIQWSELCGHAFWKTKFTPVPLPPQPAFDDMIELHAKPCLSEHNGDKSSHNRTPPKYREKDVKGVLKKDENSGLASRGIETPTRATPNSHRTQTKGSGRTLQKDPSNIKKGLNLLRMSRIAKSNLQKENEKENYRRPLPNGSEKDADVKIENTDMELDFNENSEEDALEETDGSEHTPSVPSAKMENNLQNQGKAEDTENDTHQLDTPSVTTPASVDSRSFDHESTPDRSDISAISPSVSPLVKKQRLKEDLGSGLDSDSSTSNDFSQVIWHPSDLSVRPVMPSRKVDKASEAIPSLPFEALQAPDFVKMPKEQLEAVQNRIIGILNGSTSIGDKQNVVRYLEMLSSNADAANILTNGPIMLILVKLLRQSKASALRVQLASLIGLLIRHSTFVDDSLANSGILGSLTDGLRDRHEKVRRFSMAALGELLFYISTQSADSKDNPPLESPSKDNRTAHGWQVPNSLISLVSSILRKGEDDITQLYALRTIENICSQGGVWVGRFTSQDVINNLCYIYRATGKQESMRLTAGSCLVRLVRFNPSCIQSVVEKLSFKDLASAFIKGSPREQQISLNLLNMAMLGSHMFTNVGRYLIQLAEDKNLIPSLLALVEQGSEVLKGKALVFVALLCKHGRRWLPQFFCSHKLLSVVDRLGKEKDAFVRQCLDAFLHIVASTIPGLLDIITGDIQQMMGGRRHGHISSLTSRSAPKSNIHLFPVVLHLLESSAFKHKVATLPVLRQLANLIKLVEAPFQGRDDFQITLLRILESLTEESSVILANPDIFIREILPSLTVLYKGNKDGDARFLCLKIFFDVMIILLSEPIEEEQRLNDLKYVSNTHFLPLYPTLIEDEDPIPIFAQKLLVMLLEFSFISIPDILHLKTISQCFEFLLGDLSNANVNNVKLCLALASALEMESKLLSQLKVVRRIGNFLEFVCAKGMEDLLEPTLGLCRAFLARSVSCAKGFSHTTEPTLLGDCPPEVSGAVDPQQCIRDITDFGSNVGVFLELSASRETSVADIASQCVVLLLKAAPREATTGLLTNLPKVTVILESWNKGTPHLTVQRMLHALGYACKQYLLHAMILSISIPEITRIEVIVSELKSSTVPALAKTAGLAALELQRLPRCI 1365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00900 1365 MobiDBLite consensus disorder prediction 283 510 - -
Trre4g00900 1365 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Trre4g00900 1365 MobiDBLite consensus disorder prediction 401 415 - -
Trre4g00900 1365 MobiDBLite consensus disorder prediction 419 439 - -
Trre4g00900 1365 MobiDBLite consensus disorder prediction 448 464 - -
Trre4g00900 1365 MobiDBLite consensus disorder prediction 320 351 - -
Trre4g00900 1365 FunFam Aurora kinase A 1 81 - -
Trre4g00900 1365 CDD STKc_ULK4 3 257 - -
Trre4g00900 1365 PANTHER SERINE/THREONINE-KINASE ULK4-LIKE PROTEIN-RELATED 1 1362 IPR044591 GO:0000911|GO:0000914|GO:0008017
Trre4g00900 1365 ProSitePatterns Serine/Threonine protein kinases active-site signature. 117 129 IPR008271 GO:0004672|GO:0006468
Trre4g00900 1365 Gene3D - 551 914 IPR011989 -
Trre4g00900 1365 SUPERFAMILY ARM repeat 565 915 IPR016024 -
Trre4g00900 1365 MobiDBLite consensus disorder prediction 283 318 - -
Trre4g00900 1365 FunFam Maternal embryonic leucine zipper kinase 1 297 - -
Trre4g00900 1365 ProSiteProfiles Protein kinase domain profile. 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g00900 1365 Pfam Protein kinase domain 4 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g00900 1365 Gene3D Transferase(Phosphotransferase) domain 1 1 311 - -
Trre4g00900 1365 MobiDBLite consensus disorder prediction 367 400 - -
Trre4g00900 1365 SMART serkin_6 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g00900 1365 SUPERFAMILY Protein kinase-like (PK-like) 1 283 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00900 Trre-Chr4 6864408 6870539 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00900 2 259 MAP Kinase Kinase Kinase AT3G13530 32.075 1.58e-36 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK ULK_ULK4 Trre4g00900 Pkinase 8.3e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00900 K17545 - gmx:100777288 2363.96