Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre4g00895 | ATGGGTTGTGTGTTTGGTAAAGAGTCATCAGTGAAAGAGAGGAGAGAGGAAGTTAGAGAAGCAAAAGTAGATGTGGTTGTGGGTGGTAGTGGTAGTGGTAGTGGTAGAGAGGTTGAGAATGTGAAAGAGGGTGGAGAGGAGAAGAGAATAAGGCCTAGTGGGGAGAGAAGAAGACGATCTTCGAAGCCGAATCCGAGGTTGAGTAATCCATCTAACAATGTTCATGGTGAACAGGTTGCAGCTGGTTGGCCTTCTTGGTTATCTAAGGTTGCTGGTGAAGCTATCAATGGACTGGTTCCTAGAAGGGCTGATACTTTTGAGAAACTTGATAAGATTGGGCAAGGTACATACAGCAATGTTTACAAAGCTAGGGATACTTTAACAGGGAAGATTGTTGCCCTAAAGAAGGTCCGTTTCGACAATTTAGAGCCTGAGAGTGTGAAGTTTATGGCAAGAGAGATTCTGATTCTTCGTCGTTTGGATCATCCCAATGTTGTCAAATTGGAAGGCTTAGTGACTTCAAGAATGTCATGCAGTTTATATCTTGTGTTTGAATACATGGCACATGATCTGGCTGGACTTGCTACAAATCCCGCGATTAAGTTCACAGAACCTCAGGTAAAATGTTACATGCATCAGCTATTTTCTGGGCTGGAACATTGTCACAACCGTCATGTGCTGCATCGTGATATAAAGGGTTCAAACCTTCTTATCGACAATGATGGAATTCTCAAGATTGCTGATTTTGGACTAGCTTCCTTCTATGATCCTGATCACAAGCACCCAATGACAAGTAGAGTGGTGACATTATGGTATCGACCTCCGGAACTTCTTCTTGGAGCCACTGAATATAGTGTAGGCGTGGACCTATGGAGTGCTGGCTGCATTCTTGCAGAATTATTGGCTGGAAAACCTATCATGCCTGGTCGAACAGAGGTGGAACAGCTACATAAGATATTTAAGCTATGTGGTTCTCCATCCGAAGAATATTGGAAAAAGTCAAAGTTGCCACATGCTACCATTTTTAAGCCTCAACAATCATACAAGCGATGCATAGCGGAGACTTTTAAGAATTTTCCACCATCATCCCTGCCACTGATTGAAACCCTTCTCACAATTGATCCTGATGAACGTCTGACTGCCACTGCTGCGTTGCATAGTGAATTTTTTACTACAAAACCTTATGCTTGTGATCCCTCTAGCCTTCCTAAATATCCTCCCAGTAAAGAGATGGATGCAAAGCTACGGGACGAAGAAGCTAGAAGATTGAGAGCAGCTGGTAGAGCAAATGCTGATGGTGTGAAGAAATCTCGTCCACGTGAGCGAGTAGGGAGGGGACTTCCCATTCAAGATGCCAATGCTGAACTGCAAGCAAATATTGATAAACGGCGATTGATCACACACGCAAATGCTAAGAGCAAGAGTGAGAAGTTTCCTCCTCCACACCAAGATGGAGCTCTAGGCTATCCTTTGGGTTCTTCACAACACATGGATCCAATTTTCGATCCTCCCGACATTCCATTTAGTTCAACAAACTTGTCACAACCAAAATCAAATATCCATACTTGGTCTGGTCCATTGGTTGATCCCGGTAGCGTTGGTGCACCGAGGAGAAAGAAGAAACATGGAAGGTGA | 1635 | 0.4379 | MGCVFGKESSVKERREEVREAKVDVVVGGSGSGSGREVENVKEGGEEKRIRPSGERRRRSSKPNPRLSNPSNNVHGEQVAAGWPSWLSKVAGEAINGLVPRRADTFEKLDKIGQGTYSNVYKARDTLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMAHDLAGLATNPAIKFTEPQVKCYMHQLFSGLEHCHNRHVLHRDIKGSNLLIDNDGILKIADFGLASFYDPDHKHPMTSRVVTLWYRPPELLLGATEYSVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATIFKPQQSYKRCIAETFKNFPPSSLPLIETLLTIDPDERLTATAALHSEFFTTKPYACDPSSLPKYPPSKEMDAKLRDEEARRLRAAGRANADGVKKSRPRERVGRGLPIQDANAELQANIDKRRLITHANAKSKSEKFPPPHQDGALGYPLGSSQHMDPIFDPPDIPFSSTNLSQPKSNIHTWSGPLVDPGSVGAPRRKKKHGR | 544 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre4g00895 | 544 | ProSiteProfiles | Protein kinase domain profile. | 106 | 390 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Trre4g00895 | 544 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 226 | 238 | IPR008271 | GO:0004672|GO:0006468 | |
| Trre4g00895 | 544 | Pfam | Protein kinase domain | 106 | 390 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Trre4g00895 | 544 | MobiDBLite | consensus disorder prediction | 470 | 544 | - | - | |
| Trre4g00895 | 544 | FunFam | probable serine/threonine-protein kinase At1g54610 | 93 | 188 | - | - | |
| Trre4g00895 | 544 | Gene3D | Phosphorylase Kinase; domain 1 | 94 | 188 | - | - | |
| Trre4g00895 | 544 | CDD | STKc_CDK9_like | 106 | 390 | - | - | |
| Trre4g00895 | 544 | MobiDBLite | consensus disorder prediction | 39 | 62 | - | - | |
| Trre4g00895 | 544 | ProSitePatterns | Protein kinases ATP-binding region signature. | 112 | 135 | IPR017441 | GO:0005524 | |
| Trre4g00895 | 544 | PANTHER | CELL DIVISION PROTEIN KINASE | 104 | 394 | - | - | |
| Trre4g00895 | 544 | MobiDBLite | consensus disorder prediction | 8 | 23 | - | - | |
| Trre4g00895 | 544 | SMART | serkin_6 | 106 | 390 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Trre4g00895 | 544 | MobiDBLite | consensus disorder prediction | 507 | 522 | - | - | |
| Trre4g00895 | 544 | Gene3D | Transferase(Phosphotransferase) domain 1 | 189 | 429 | - | - | |
| Trre4g00895 | 544 | SUPERFAMILY | Protein kinase-like (PK-like) | 101 | 396 | IPR011009 | - | |
| Trre4g00895 | 544 | MobiDBLite | consensus disorder prediction | 1 | 75 | - | - | |
| Trre4g00895 | 544 | FunFam | probable serine/threonine-protein kinase At1g54610 | 189 | 430 | - | - | |
| Trre4g00895 | 544 | MobiDBLite | consensus disorder prediction | 426 | 445 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre4g00895 | Trre-Chr4 | 6798861 | 6802457 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre4g00895 | 101 | 428 | Core Cell Cycle Gene Families | AT5G10270 | 52.035 | 1.53e-118 | 357 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| PK | CMGC_CDK-CRK7-CDK9 | Trre4g00895 | Pkinase | 2.4e-69 | CL0016 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre4g00895 | K08819 | - | gmx:100779413 | 947.192 |