Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00886 ATGGAAGGCTCTGTCATTGAACGTCTTGATTTTGGGAAGATGGGATATGGGTGCAAGCATTACAGAAGAAGATGCAGGATTCGAGCTCCTTGTTGCAATGAGGTTTACTCATGCCGCCATTGTCATAACGAGGCAACGAGTATGCTGAAAAACCCTTTTGATCGCCATGAACTTGTTCGTCAAGATGTTGAACAAGTTGTTTGTGCGGTTTGTGACACAGAACAACCAGTTGCTCAAGTTTGCACTAACTGTGGTGTTAGAATGGGGGAATATTTCTGTGAAATCTGCAAATTCTTCGATGATGATACGGGGAAACAACAGTTTCATTGTGATGATTGTGGGATCTGCAGAGTTGGTGGGAGTGAGAATTATTTCCATTGCCAGAAGTGCGGCTCTTGCTATTCAGTTGCTTTGCGCGATAATCATTTATGTGTGGAGAACTCCATGAGGCATCACTGTCCAATTTGTTATGAGTACCTTTTTGACTCGTTGAAAGACACCACTGTTATGAAATGTGGGCACACAATGCATTGTGAATGCTACCACGAGATGATAAAGCGTGACAAGTACTGTTGTCCCATATGTTCCAAATCGGTGATTGACATGTCTATGACATGGAAGAGAATCGATGAAGAGATTGAAGCAACTGCCATGCCTGATGATTATCGGAATAGAAAGGTCTGGATACTTTGTAATGACTGCAACGATACAACCGAAGTTTACTTCCACATTATTGGGCATAAATGCGGTCATTGCAGTTCATATAACACTCGTGCTATTGCTCCTCCTGTTCTTCCACAATAA 804 0.4229 MEGSVIERLDFGKMGYGCKHYRRRCRIRAPCCNEVYSCRHCHNEATSMLKNPFDRHELVRQDVEQVVCAVCDTEQPVAQVCTNCGVRMGEYFCEICKFFDDDTGKQQFHCDDCGICRVGGSENYFHCQKCGSCYSVALRDNHLCVENSMRHHCPICYEYLFDSLKDTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSMTWKRIDEEIEATAMPDDYRNRKVWILCNDCNDTTEVYFHIIGHKCGHCSSYNTRAIAPPVLPQ 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00886 267 ProSiteProfiles Zinc finger CTCHY-type profile. 88 152 IPR017921 -
Trre4g00886 267 SUPERFAMILY CHY zinc finger-like 15 87 IPR037274 GO:0008270
Trre4g00886 267 SUPERFAMILY Zinc hairpin stack 89 146 IPR037275 -
Trre4g00886 267 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 13 263 - -
Trre4g00886 267 SMART ring_2 153 195 IPR001841 -
Trre4g00886 267 ProSiteProfiles Zinc finger CHY-type profile. 11 86 IPR008913 GO:0008270
Trre4g00886 267 ProSiteProfiles Zinc finger RING-type profile. 153 196 IPR001841 -
Trre4g00886 267 FunFam RING finger and CHY zinc finger domain-containing protein 1 224 266 - -
Trre4g00886 267 Pfam Zinc-ribbon 200 258 IPR039512 -
Trre4g00886 267 Pfam Zinc finger, C3HC4 type (RING finger) 153 195 IPR018957 GO:0046872
Trre4g00886 267 Gene3D - 228 262 - -
Trre4g00886 267 SUPERFAMILY RING/U-box 152 204 - -
Trre4g00886 267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 227 IPR013083 -
Trre4g00886 267 Pfam CHY zinc finger 18 98 IPR008913 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00886 Trre-Chr4 6717680 6720848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00886 10 266 C2H2 Transcription Factor Family AT3G18290 39.313 1.52e-56 193