Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00880 ATGGGTGGGTGTTTTCCTTGTTTTGGATCATCCAACAAGGAGGACACTAATGCTGTCAAAGAGGTTTCAAAGAAAGATACTTTCAAAGAAGCTTCTCTTCCTCAATCTCATCACCCCACTAGGGTTAGCTCAGATAAATCAAAATCAAAAAGTGTCTCAGATTCTAAGAAGGAAGCACCAATTCAAAAGGATGGACCAACGGCACATATTGCTGCACAAACATTTACATTCCGAGAGCTTGCAGCTGCTACAAAGAATTTTAGGCCAGAGTGTTTATTAGGTGAAGGAGGGTTCGGACGTGTTTACAAAGGTCGCCTTGAGAGCACAGGACAGGTAGTTGCTGTAAAACAGCTTGACCGAAATGGACTCCAAGGAAATCGGGAGTTTTTGGTGGAAGTTCTCATGCTCAGCCTCTTACATCACCCAAATCTTGTGAATCTGATTGGTTATTGCGCTGATGGTGATCAACGGCTGCTCGTTTATGAATTTATGCCATTGGGATCTTTGGAGGATCATTTACACGATCTTCCTCCGGACAAGGAGCCTCTAGACTGGAACACAAGGATGAAAATAGCAGCTGGTGCAGCCAAGGGATTGGAATATTTGCATGACAAGGCAAATCCCCCTGTGATATATAGAGACTTAAAATCATCCAACATCCTCTTAGACGAAGGTTTTCATCCCAAGTTATCAGATTTTGGGTTGGCAAAACTTGGTCCAGTTGGTGACAAGACTCATGTATCCACACGAGTAATGGGAACATATGGCTATTGTGCTCCAGAATATGCTATGACTGGTCAACTAACTCTGAAATCTGACGTCTATAGTTTTGGAGTTGTCTTCCTTGAACTCATTACCGGGCGCAAGGCCATTGATAATACGCGTGGGCATGGAGAGCATAATCTTGTGGCATGGGCACGACCTCTATTTAAAGACCGCAGGAAGTTTCCGAAAATGGCTGATCCACTACTTCAAGGTAGATATCCAATGCGGGGACTGTACCAAGCACTTGCAGTTGCAGCAATGTGTTTGCAGGAACAAGCTGCTACAAGGCCTCTTATTGGAGATGTCGTGACTGCTCTCACATATCTGGCCTCCCAAACATTCGACCCAAATGCAGGCAGCCAGTCGAACAGGGGCGGTTCATCAACCCCTAGGATGAGGGATGACAGAAGGAGCAGCATGGCAGATAGTGTGGATAGTCCCGACCGTGCACGTCTTGGTTCCCCTTCCACCCATAGAAACTCACCTGACTTCAGGAAGAGAGAAGGTAGGGATCCAAGTGAGTTGGGAAGGATCGATACTGGTGGTGGCGGATCAGGGAGAAAATGGGGATTGGATGATTTAGAAAGGCGCGATTCTCAGAGAGACAGCCCTGTAAATACCGGAAGAGGTAGAGAGACTCCAAGGAACCGTGACCTGGATAGAGAACGTGCAGTTGCGGAAGCAAGAGTATGGGGTGAGAATTGGAGAGAGAAGAAAAGAGCAAATGCAATGGGTAGCTTTGATGGTACAAATGAATGA 1524 0.4613 MGGCFPCFGSSNKEDTNAVKEVSKKDTFKEASLPQSHHPTRVSSDKSKSKSVSDSKKEAPIQKDGPTAHIAAQTFTFRELAAATKNFRPECLLGEGGFGRVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLDEGFHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNTRGHGEHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQTFDPNAGSQSNRGGSSTPRMRDDRRSSMADSVDSPDRARLGSPSTHRNSPDFRKREGRDPSELGRIDTGGGGSGRKWGLDDLERRDSQRDSPVNTGRGRETPRNRDLDRERAVAEARVWGENWREKKRANAMGSFDGTNE 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00880 507 MobiDBLite consensus disorder prediction 444 460 - -
Trre4g00880 507 MobiDBLite consensus disorder prediction 369 383 - -
Trre4g00880 507 ProSitePatterns Protein kinases ATP-binding region signature. 93 116 IPR017441 GO:0005524
Trre4g00880 507 SUPERFAMILY Protein kinase-like (PK-like) 70 361 IPR011009 -
Trre4g00880 507 MobiDBLite consensus disorder prediction 384 399 - -
Trre4g00880 507 FunFam Serine/threonine-protein kinase PBS1 164 379 - -
Trre4g00880 507 Gene3D Transferase(Phosphotransferase) domain 1 164 379 - -
Trre4g00880 507 MobiDBLite consensus disorder prediction 17 32 - -
Trre4g00880 507 FunFam Serine/threonine-protein kinase PBS1 60 163 - -
Trre4g00880 507 PANTHER OS07G0668900 PROTEIN 4 373 - -
Trre4g00880 507 Gene3D Phosphorylase Kinase; domain 1 58 163 - -
Trre4g00880 507 CDD STKc_IRAK 93 362 - -
Trre4g00880 507 MobiDBLite consensus disorder prediction 41 63 - -
Trre4g00880 507 ProSitePatterns Serine/Threonine protein kinases active-site signature. 210 222 IPR008271 GO:0004672|GO:0006468
Trre4g00880 507 Pfam Protein kinase domain 92 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g00880 507 SMART serkin_6 87 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g00880 507 MobiDBLite consensus disorder prediction 415 430 - -
Trre4g00880 507 ProSiteProfiles Protein kinase domain profile. 87 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g00880 507 MobiDBLite consensus disorder prediction 1 65 - -
Trre4g00880 507 MobiDBLite consensus disorder prediction 369 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00880 Trre-Chr4 6667027 6671707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00880 4 406 Glycoside Hydrolase AT3G07070 62.287 3.30e-172 490
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Trre4g00880 Pkinase 8.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00880 - - gmx:100814575 900.197