Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00873 ATGAAGGTAGTGATGGAACTAAAGGGATGGGGATTTGATCCTAAAACGACATTTTTCATTACCGCGTTGTGTGCTAAGAGTTTGACATCTGATTGGCAAAGGAAGGTTGGTATGTATAAGAAATGGGGTTGGTCTAAAGAAGATATTGTTTCAGCATTTTTGAAATATCCTTGGTGTATGTTGGCATCTTTGGAGAAAATTGAGGCAGTAATGGGGTTTTTCGTGAAAGAGATTGGTTGGGAGTCGACTTTGCTTGCCAAAGATCCGATACTTATTACGCTGAGTTTGGAGAGAAGGATTGTTCCTAGGGCTTTTGTCTTGAAGTTTCTTGAATCTAAAGGTTTGATTGAGGATGCTAAATTGGCTGAACCTTTCGAAGTTACTGAGAAAGAGTTTTTGAAGAATTTTGTGGATTGTTTTAAGGAAGAAGCTTCTCAGCTGTTGAAGTTGTATGAAGAGAACAAAGATACTCCAAATAGGGCTTTAAAAAAGTGGGAAAGCTCTCAAGCACACGCTGACTTCACTCCTCCGCCTCCTTCACTCACGGCCGACCTCGTTTTCACTCCTCCATCTCCTTCTCGTTGCTCATCGACTACAGGTATGTCTTTAGCCGCTGCAGGTGACCCACCTGTACCTCCACCAGGTGGTGGTGGAGATTTAGGTGGCCATGGTTCAAACTCATCTAGACAACGACGTGCTGGTCGCGGACGTGGTAAAAAACTTGCACCCCGCCAGCTCAAACATCGAGTGGTGTACAACCGTGATTTGACGGATATGCCCCGTCGCGTTCTAGAGGATGGTTCTGAGGTACCACTTGAACCTGACCCGGAGGAAGAAACCCGTGTTGATACCGAAATTACTCGTGCTGATCTTTTGGCACCCGATGAGAATATTTTGGTGGACAGACATGGTAGAATCGTCCTCATGCCTTACGCAGATGATTTCCAACCACAAAAACACGCTTCGGTAGCCATCACTAAGACGATTGTGGCAAACTACCATGAACCATTTATATCGTGGAAAGAGGTGAAAAAGAATAAGAAGGCATGGGAGTCATTTTGGAATACTTTTCGTAACGTCGACTTAAAGCTGATAATGAAGCTCGACTCCAATCTCGGCTCGATGAAATGA 1131 0.443 MKVVMELKGWGFDPKTTFFITALCAKSLTSDWQRKVGMYKKWGWSKEDIVSAFLKYPWCMLASLEKIEAVMGFFVKEIGWESTLLAKDPILITLSLERRIVPRAFVLKFLESKGLIEDAKLAEPFEVTEKEFLKNFVDCFKEEASQLLKLYEENKDTPNRALKKWESSQAHADFTPPPPSLTADLVFTPPSPSRCSSTTGMSLAAAGDPPVPPPGGGGDLGGHGSNSSRQRRAGRGRGKKLAPRQLKHRVVYNRDLTDMPRRVLEDGSEVPLEPDPEEETRVDTEITRADLLAPDENILVDRHGRIVLMPYADDFQPQKHASVAITKTIVANYHEPFISWKEVKKNKKAWESFWNTFRNVDLKLIMKLDSNLGSMK 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00873 376 MobiDBLite consensus disorder prediction 167 244 - -
Trre4g00873 376 MobiDBLite consensus disorder prediction 230 244 - -
Trre4g00873 376 SMART mt_12 50 81 IPR003690 GO:0003690|GO:0006355
Trre4g00873 376 SMART mt_12 82 116 IPR003690 GO:0003690|GO:0006355
Trre4g00873 376 Gene3D Transcription termination factor 3, mitochondrial 2 150 IPR038538 -
Trre4g00873 376 MobiDBLite consensus disorder prediction 186 203 - -
Trre4g00873 376 Pfam mTERF 33 133 IPR003690 GO:0003690|GO:0006355
Trre4g00873 376 PANTHER CGI-12 PROTEIN-RELATED 6 143 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00873 Trre-Chr4 6600396 6609207 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre4g00873 mTERF 9.6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00873 K15032 - tpra:123883705 182.185