Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00872 ATGTTTTGGTACTCTCGCAGAGCATTGCTCTGTCCAAACCTCACATTCAAAACTCAAACCCCCTCTTCATTTCTTCATCATCTCCAACATTTTTCCTCTTCCAATCAACAACAATCTTTCAGAGTCAACTACCTCGTTCAAAACCTCGGTTTCTCCCATGAAACAGCTTCAAAACTCTCCAACCAAGTTCATTTCAAAGACTCAAAAAAACCAGACACAATCTTAGCATTTTTCAAATCCTATGGCTTCTCAAATAATCACTTATTTCGTATCATCAAAACTCGCCCAGATGTTCTCTCTTTCGATCTTAACAAAATCATTCTCCCAAAATTCAATTTCCTTCTCTCAAAAGGTGCTTCAAAATCCGATCTTGTTCACATCATTACCAAAACCCCCGTTATCTTGTGTCAAAGCTTGGAAAATACTATCACCCCATCTTATGATTTTGTCAAAAGATTCTTACTTTCTGATCAATCAACTATTGAATTTCTCAAACATTGTGATCGCATGATTTTTTCTAAAAACCCATTTCAGAATATTCAACTTTTGATTCAAAATGGTGTTCCTGAGTCAAAGATGGTTATTTTGCTACGAAATTGGTATCCTATAGTTGCTGAAAATCCTCTTTTTTTGAATAAGGCTGTGATGGAAGTAAAGGAATTGGGATTTAACCCTAAATCGACGGTTTTCATTGTCGCGTTGCGTGCTAAGGTTAATAGTAAGTCACTTTGGGAAAGGAAGATTGATGTGTTTAAGAAATGGGGTTGGTCTGAAGAGAATGTTGTGTCAGCATTTGTGAAACATCCTTGGTGTATGTTATCATCTGTTGAGAAAATTGAGGAAGTGATGAAGTTTTTTGTCAATGAAATGGGTTGGGATTCTCTTGTGCTTGCTAAGTATCCAGTACTTTTTTTGCATAGTTTGGAGAAAAGGGTTATTCCTAGGGCATTTGTTTTGAAATTTCTTGAATCTAAAGGTTTGATTAAGAATGCTAAATTGGCTGAACCTTTCAAAGTTACTGAGAGTGTGTTTTTGAAGAGATATGTGACTTGCTATAAGGAAGAAGCTTCTCAGTTGTTGAAGTTGTATGAAGATAAGAAAAATGTTTCAAATAAGGTTTTGAAAGAAGGTTTGCGACCGCGACCTGTGAAGCGAAATCAAGGGTCTCCGCGACATGATCATGGTCATCAGCTGCATTCAACTGTGTCTGCGATTTAA 1218 0.3662 MFWYSRRALLCPNLTFKTQTPSSFLHHLQHFSSSNQQQSFRVNYLVQNLGFSHETASKLSNQVHFKDSKKPDTILAFFKSYGFSNNHLFRIIKTRPDVLSFDLNKIILPKFNFLLSKGASKSDLVHIITKTPVILCQSLENTITPSYDFVKRFLLSDQSTIEFLKHCDRMIFSKNPFQNIQLLIQNGVPESKMVILLRNWYPIVAENPLFLNKAVMEVKELGFNPKSTVFIVALRAKVNSKSLWERKIDVFKKWGWSEENVVSAFVKHPWCMLSSVEKIEEVMKFFVNEMGWDSLVLAKYPVLFLHSLEKRVIPRAFVLKFLESKGLIKNAKLAEPFKVTESVFLKRYVTCYKEEASQLLKLYEDKKNVSNKVLKEGLRPRPVKRNQGSPRHDHGHQLHSTVSAI 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00872 405 SMART mt_12 294 328 IPR003690 GO:0003690|GO:0006355
Trre4g00872 405 SMART mt_12 262 293 IPR003690 GO:0003690|GO:0006355
Trre4g00872 405 SMART mt_12 89 120 IPR003690 GO:0003690|GO:0006355
Trre4g00872 405 SMART mt_12 125 156 IPR003690 GO:0003690|GO:0006355
Trre4g00872 405 MobiDBLite consensus disorder prediction 374 398 - -
Trre4g00872 405 FunFam Mitochondrial transcription termination factor-like 139 356 - -
Trre4g00872 405 PANTHER CGI-12 PROTEIN-RELATED 37 355 IPR003690 GO:0003690|GO:0006355
Trre4g00872 405 Pfam mTERF 220 344 IPR003690 GO:0003690|GO:0006355
Trre4g00872 405 Pfam mTERF 75 224 IPR003690 GO:0003690|GO:0006355
Trre4g00872 405 Gene3D Transcription termination factor 3, mitochondrial 59 174 IPR038538 -
Trre4g00872 405 Gene3D Transcription termination factor 3, mitochondrial 175 362 IPR038538 -
Trre4g00872 405 MobiDBLite consensus disorder prediction 374 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00872 Trre-Chr4 6590508 6591725 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre4g00872 mTERF 1.6e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00872 K15032 - gmx:102663105 385.956