Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00868 ATGTCAACTTCTAGAACCTCAAACACTTCCCTTAAAGGACATAATCATCATCACAATCAAACTCAAATTAATCTATCTCTTCTTAAACGAAACACGTCGGTTTGCAGCGAAAAAAGAGGGAGAAGAAAACAAACAGAACCAGGTAAGTTTCTTGGTGTAAGGAGAAGACCTTGGGGTAGATATGCAGCTGAAATTAGAGATCCTAGTACTAAAGAAAGACATTGGCTTGGAACATTTGATACTGCTGAAGAAGCTGCTTTTGCTTATGATAAAGCTGCTCTTTCCATCAAAGGTAGCAATGCTAGAACAAATTTCATCTATTCTTCTGAATCTGATGAAACCAATCTTGATCACAATGTTCAAAAAACACAACCAACCAATCAAATTGAAGAACAAAATTCTTCTCATTTGAACAATGAAAATCTGTTTTTCTCTAATGATTATAATAACTCAGGATATCTCGAATGCATTGTTCCTGTTAATTGTTTCAAACCAATTTCCAACAACAATTCAAACTATGATCATAATAGCAATGCAAATGGTTCAAGTGAACATCAAAATGTTGTTGATTCCATTAGCACAACAAATTACTTCATGCAGGGTCAATCATTTTATGATCACTACACTCCATTCTCTCAAGAATCAATTAACATTAACACAAGTGAAAGTAATGAAGGATTATCATGGGATTGCAACTACAATGAACTTTCAGCTATTTTTAACAAACCACTAAGGAATAATGAAAGTTCAAGCTATGGACTAATGACAACTCATGATGTTTCTTCAACTACTTATTCTTCGTTCGGCGATGTTGACATCGGATACTCACTCTTCTAA 837 0.3417 MSTSRTSNTSLKGHNHHHNQTQINLSLLKRNTSVCSEKRGRRKQTEPGKFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAAFAYDKAALSIKGSNARTNFIYSSESDETNLDHNVQKTQPTNQIEEQNSSHLNNENLFFSNDYNNSGYLECIVPVNCFKPISNNNSNYDHNSNANGSSEHQNVVDSISTTNYFMQGQSFYDHYTPFSQESININTSESNEGLSWDCNYNELSAIFNKPLRNNESSSYGLMTTHDVSSTTYSSFGDVDIGYSLF 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00868 278 Gene3D AP2/ERF domain 49 107 IPR036955 GO:0003700|GO:0006355
Trre4g00868 278 FunFam ethylene-responsive transcription factor RAP2-11 48 107 - -
Trre4g00868 278 Pfam AP2 domain 50 98 IPR001471 GO:0003700|GO:0006355
Trre4g00868 278 CDD AP2 49 105 IPR001471 GO:0003700|GO:0006355
Trre4g00868 278 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700|GO:0006355
Trre4g00868 278 PRINTS Ethylene responsive element binding protein signature 72 88 IPR001471 GO:0003700|GO:0006355
Trre4g00868 278 ProSiteProfiles AP2/ERF domain profile. 49 106 IPR001471 GO:0003700|GO:0006355
Trre4g00868 278 MobiDBLite consensus disorder prediction 1 23 - -
Trre4g00868 278 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 30 185 - -
Trre4g00868 278 SMART rav1_2 49 112 IPR001471 GO:0003700|GO:0006355
Trre4g00868 278 SUPERFAMILY DNA-binding domain 49 107 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00868 Trre-Chr4 6565720 6566556 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00868 1 116 AP2-EREBP Transcription Factor Family AT5G18560 59.524 5.68e-43 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Trre4g00868 AP2 1.8e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00868 - - mtr:11443354 410.609