Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00867 ATGGAGCACTATCCTCGCTCCACTCAACCTGATCCGTCACCGGAATGGACCGGACCCGATTCTCAAACCGCTCTCGAAGAACCTATGTGGCAATTGGGGTTAGGTTCTTCTGCTGGTGGTGGTGGTGAAGATTCGTATCCACTTCGACCTGATGAGATTGATTGTACTTACTATTTGAGAACTGGTTTTTGTGGCTTTGGTTCTAGGTGTCGGTTCAATCATCCTCGTGACCGCGGCGCGGTTATTGGAGCTGCTGCTAGGACTGTAGGAGAGTATCCCGAACGCGCTGGCCAGCCGGTTTGCCAGTATTATATGAGGACAAGATCTTGCAAATTTGGTGCGTCTTGCAAGTACCATCATCCTAGACAGACTGGAGCAACTGATGCTACTCCTGTTTCACTAAATTATTATGGATATCCGTTACGTCCGGGTGAAAAGGAATGTTCGTATTTTGTGAAAACGGGACAGTGCAAGTTTGGTGCTACTTGTAAATTTGATCATCCAGTTCCTGCTCCATCGCCGGTTCCCCCAGTTTCACCTTTACATGTACAAGTACCTTCGCCATTATATCCAACAGTACAGCCTCCATCTGGTCCTTCTTCACAACAAATTGGTGTACTGGTTGCAAGGCCACCTCTACTACCTGGTTCATATGTTCAAGGCCCTTATGGACCTGTGGTATTGTCCCCAACCATGGTTCCATTTTCTGGCTGGAGTCCTTATCAGGCCACTGCAACAAGCCCTGTACTTCCTTCTGGTTCTCCGGCTAATGTTGGTTCCACACAGCTTTATGGCATAACCCACATACCTTCATCAGCTAATGCCTATGCTGGACCTTATCAATCTTCTGTTTCCTCGGTCGGTCCTTCAAGCAGAAATCAGAAGGAGCAGTCATTTCAAGCAAGGCCTAATCAACCAGAGTATCATTACTACACTAAACCAGAAGAGCTTCCATTTGGTCCATCATATAGCTATCACCAACCACCAGACACGAATGCACCAAAAGCAAATGTTGTCCTTAGTCCTGCAGGTCTTCCTTTACGCCCGGGAGCAGCACTTTGCACTCATTTCGCACAGCGTGGTATATGCAAGTTTGGTCCTGCATGTAAATTCGATCATCCTATTGCATCACTGAGTTACAGTCCATCTGCATCTTCCCTAACAGATGCGCCAGTTGCACCCTACTTTGTGACTTCATCTGTTGGTACTCTTGCTCCTTCATCTTCTTCACCAGACTTACAGCCTGAACCTACCGCAGGATCCAGCAGGGATTCTGTTCCATCCAGAATACCTTCATCAGTGAGCACATCGACCGGATCAGTTGGCTTGACTTTGTCAACCGGTGGCCCTGTTTCTCAATCAAGCACTCGGAGTTCTAGTCCTTTAGCACCTGCCAACACCACAACAAGTAACAATGTCTCTCAAAGCTCAAGCTAA 1437 0.4753 MEHYPRSTQPDPSPEWTGPDSQTALEEPMWQLGLGSSAGGGGEDSYPLRPDEIDCTYYLRTGFCGFGSRCRFNHPRDRGAVIGAAARTVGEYPERAGQPVCQYYMRTRSCKFGASCKYHHPRQTGATDATPVSLNYYGYPLRPGEKECSYFVKTGQCKFGATCKFDHPVPAPSPVPPVSPLHVQVPSPLYPTVQPPSGPSSQQIGVLVARPPLLPGSYVQGPYGPVVLSPTMVPFSGWSPYQATATSPVLPSGSPANVGSTQLYGITHIPSSANAYAGPYQSSVSSVGPSSRNQKEQSFQARPNQPEYHYYTKPEELPFGPSYSYHQPPDTNAPKANVVLSPAGLPLRPGAALCTHFAQRGICKFGPACKFDHPIASLSYSPSASSLTDAPVAPYFVTSSVGTLAPSSSSPDLQPEPTAGSSRDSVPSRIPSSVSTSTGSVGLTLSTGGPVSQSSTRSSSPLAPANTTTSNNVSQSSS 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00867 478 Gene3D - 124 175 - -
Trre4g00867 478 ProSiteProfiles Zinc finger C3H1-type profile. 142 170 IPR000571 GO:0046872
Trre4g00867 478 Gene3D - 349 405 - -
Trre4g00867 478 ProSiteProfiles Zinc finger C3H1-type profile. 348 376 IPR000571 GO:0046872
Trre4g00867 478 PANTHER PROTEIN PHOSPHATASE RELATED 20 394 - -
Trre4g00867 478 ProSiteProfiles Zinc finger C3H1-type profile. 95 123 IPR000571 GO:0046872
Trre4g00867 478 SUPERFAMILY CCCH zinc finger 144 170 IPR036855 GO:0046872
Trre4g00867 478 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 144 168 IPR000571 GO:0046872
Trre4g00867 478 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 98 122 IPR000571 GO:0046872
Trre4g00867 478 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 351 374 IPR000571 GO:0046872
Trre4g00867 478 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 53 76 IPR000571 GO:0046872
Trre4g00867 478 SUPERFAMILY CCCH zinc finger 98 123 IPR036855 GO:0046872
Trre4g00867 478 Gene3D - 47 123 - -
Trre4g00867 478 SUPERFAMILY CCCH zinc finger 351 378 IPR036855 GO:0046872
Trre4g00867 478 MobiDBLite consensus disorder prediction 280 304 - -
Trre4g00867 478 MobiDBLite consensus disorder prediction 404 478 - -
Trre4g00867 478 MobiDBLite consensus disorder prediction 1 25 - -
Trre4g00867 478 SMART c3hfinal6 348 375 IPR000571 GO:0046872
Trre4g00867 478 SMART c3hfinal6 95 122 IPR000571 GO:0046872
Trre4g00867 478 SMART c3hfinal6 142 169 IPR000571 GO:0046872
Trre4g00867 478 SMART c3hfinal6 49 76 IPR000571 GO:0046872
Trre4g00867 478 SUPERFAMILY CCCH zinc finger 52 77 IPR036855 GO:0046872
Trre4g00867 478 ProSiteProfiles Zinc finger C3H1-type profile. 49 77 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00867 Trre-Chr4 6560229 6564215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00867 1 444 C2H2 Transcription Factor Family AT5G18550 54.066 2.99e-137 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre4g00867 zf-CCCH 7.4e-09 CL0537