Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00852 ATGGCTTTGAGTATTGCTAATGGTACTGATTTTGCAAAAGTTTCTGAAATTAACTCTGATAAAGCAGTTTGGAATGTTAAGGCGAAAGTCATTAGACTTTGGCAAGTTTCTGATTTTAATCGCAATACTTTACCCTTTTCCATTGAAATGGTTTTGCTTGATTCTCATGGTGCTTATCGTACTACTCGCCATCCATATAAGTTTAATTTTCAATTTAACTCTTTGGTTCAAAGGCTGTCTAATTTTGAAATTTCAAAATCTCCATTTAAATTTGTTCCAATCGCTGAGATTGCTGGGGGATCCTATGACACTGATTATCTATGTGATGTGATTGGTTTATTGACTGGTGTTGGGCAAGAGCGTGAAGTCACAAATCAGAATGGAACCACAACAAAACTTAATGTCATTGCCTTGGAGGCAGATGGGAGCAAGATTCAGTGCACCTTATTTGGAAATTATGTGGACGAGCTGAATGGATTCCTTGGTGCTGGAGATTGTAACAATGCTATTGTTATAATGCAGTTTGCAAAGGCAAAGAATTTTCAAGACAAAATCCACATACAAAACTGCATGAACTGCAGTGTGCTGATTTTTAACTCAAGCTGTGCAGAAAGTGTTGCATTTAAGTCAAGCCTATCTGAAAATGTTGATAGTCCATCTCCTATGGCTTTAACCCAACTCGGATGTGAATCAAGAGTTGAACCCAAGGATGAATTCTTGAACCACAGCCGCAGGATTACTTTGCAAAGTCTTAGAGATGCTGGATGTGAAGGTTTTCATGTTGTTGCTGCTACTATCAAAAAGGTTTTAAACCCTGATAGTTTTTGGTACACTGCCTGTGTTTGCAATAAGGCTGTTATCCCGGACTCAAAAATGTTCTATTGTGAAAAGTGCAACAAGCATGTTGTGAGGGTTTTTCCTAGGTTTTGTATCAAGGTTAGGGTTATGGATAATACTGATTCTGCTATCTTTGTCATATTTGACAAAGATGCATCTTCTCTTTTTGATTTGACCTGTGCTGATATGGTTCATGCAATTCAAACTGGTGCACAAGCTGGAGTTGTGCCTGCTCTACTTGATACATTGGTTGATAAGACATGGTTATTCAAGGTTGAGTCTAAGGCAAATCATAACCAAAGGTTTGAGCAATCCTTCAGGGTTAGAAAGATTTGCACCGATGCTGATATCATCCAACAATTTCAAGAAAAGTGGGACAGCGAAGAAGCTGCTGTCGTAAAGTCCATTAATGAGTGTGGGTCTATGAGTACATTGGTGGGGAAAGGGAAAGATATGTTGATTTCTGGATCTTCAAATGTGATGAATGAGGACTGTGAGAGTTTGTCTGCAAGTGATGTAAAAGGAAAAGGGGTCTTTGTTGAAGCAACACAAGTTGGTGAATTTACCCAAGATTTAATGAACAAATTTGTTGATGCTGTGGTGGATCTTAGTGATGATGGTAGCCCCACTTTAGTGAAAAACAACTCTGTTTCTGTTGTTAGTGAAAAAGTTTCTGTCCCAGCTAAGAGTGATGAAGTATTTGCAACACCTGCTGTCAAAGGTCAGCGCAAAAAATCTGTGGCTAAGCGTGTTTCTCCTAAGAGCAATGAAGTTGATGAGGATGACAATGCTCCAATCAAGCAGTTGAAAAGGCCTATTAAGATTGAAAAAATTTGA 1674 0.3853 MALSIANGTDFAKVSEINSDKAVWNVKAKVIRLWQVSDFNRNTLPFSIEMVLLDSHGAYRTTRHPYKFNFQFNSLVQRLSNFEISKSPFKFVPIAEIAGGSYDTDYLCDVIGLLTGVGQEREVTNQNGTTTKLNVIALEADGSKIQCTLFGNYVDELNGFLGAGDCNNAIVIMQFAKAKNFQDKIHIQNCMNCSVLIFNSSCAESVAFKSSLSENVDSPSPMALTQLGCESRVEPKDEFLNHSRRITLQSLRDAGCEGFHVVAATIKKVLNPDSFWYTACVCNKAVIPDSKMFYCEKCNKHVVRVFPRFCIKVRVMDNTDSAIFVIFDKDASSLFDLTCADMVHAIQTGAQAGVVPALLDTLVDKTWLFKVESKANHNQRFEQSFRVRKICTDADIIQQFQEKWDSEEAAVVKSINECGSMSTLVGKGKDMLISGSSNVMNEDCESLSASDVKGKGVFVEATQVGEFTQDLMNKFVDAVVDLSDDGSPTLVKNNSVSVVSEKVSVPAKSDEVFATPAVKGQRKKSVAKRVSPKSNEVDEDDNAPIKQLKRPIKIEKI 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00852 557 MobiDBLite consensus disorder prediction 529 557 - -
Trre4g00852 557 CDD RPA1_DBD_B_like 109 212 - -
Trre4g00852 557 Gene3D - 233 403 IPR012340 -
Trre4g00852 557 Gene3D - 83 219 IPR012340 -
Trre4g00852 557 SUPERFAMILY Nucleic acid-binding proteins 89 215 IPR012340 -
Trre4g00852 557 CDD RPA1_DBD_C 262 390 IPR047192 -
Trre4g00852 557 MobiDBLite consensus disorder prediction 518 557 - -
Trre4g00852 557 SUPERFAMILY Nucleic acid-binding proteins 257 390 IPR012340 -
Trre4g00852 557 PANTHER OS03G0429900 PROTEIN 12 402 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre4g00852 557 Pfam Replication factor-A C terminal domain 261 389 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00852 Trre-Chr4 6432929 6435593 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00852 59 390 Core DNA Replication Machinery Family AT5G08020 23.782 8.57e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00852 - - tpra:123915358 663.685