Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00851 ATGGCTTTGAGTATTGCTAATGGTACTGATTTTGCAAAAGTTTCTGAAATTAACTCTGATAAAGCAGTTTGGAATGTTAAGGCGAAAGTCATTAGACTTTGGCAAGTTTCTGATTTTAATCGCAATACTTTACCCTTTTCCATTGAAATGGTTTTGCTTGATTCTCATGGTGACAGAATTCATGCAACAATCAAGAAAACTTTGATTTACAAATTTAAGAATGAAATCGTTGAAGGTAGAACTTATGCTTTTGAAAATCTTGGTGTTTCAAATAATGGAGGTGCTTATCGTACTACTCGCCATCCATATAAGTTTAATTTTCAATTTAACTCTTTGGTTCAAAGGCTGTCTAATTTTGAAATTTCAAAATCTCCATTTAAATTTGTTCCAATCGCTGAGATTGCTGGGGGATCCTATGACACTGATTATCTATGTGATGTGATTGGTTTATTGACTGGTGTTGGGCAAGAGCGTGAAGTCACAAATCAGAATGGAACCACAACAAAACTTAATGTCATTGCCTTGGAGGCAGATGGGAGCAAGATTCAGTGCACCTTATTTGGAAATTATGTGGACGAGCTGAATGGATTCCTTGGTGCTGGAGATTGTAACAATGCTATTGTTATAATGCAGTTTGCAAAGGCAAAGAATTTTCAAGACAAAATCCACATACAAAACTGCATGAACTGCAGTGTGCTGATTTTTAACTCAAGCTGTGCAGAAAGTGTTGCATTTAAGTCAAGCCTATCTGAAAATGTTGATAGTCCATCTCCTATGGCTTTAACCCAACTCGGATGTGAATCAAGAGTTGAACCCAAGGATGAATTCTTGAACCACAGCCGCAGGATTACTTTGCAAAGTCTTAGAGATGCTGGATGTGAAGGTTTTCATGTTGTTGCTGCTACTATCAAAAAGGTTTTAAACCCTGATAGTTTTTGGTACACTGCCTGTGTTTGCAATAAGGCTGTTATCCCGGACTCAAAAATGTTCTATTGTGAAAAGTGCAACAAGCATGTTGTGAGGGTTTTTCCTAGGTTTTGTATCAAGGTTAGGGTTATGGATAATACTGATTCTGCTATCTTTGTCATATTTGACAAAGATGCATCTTCTCTTTTTGATTTGACCTGTGCTGATATGGTTCATGCAATTCAAACTGGTGCACAAGCTGGAGTTGTGCCTGCTCTACTTGATACATTGGTTGATAAGACATGGTTATTCAAGGTTGAGTCTAAGGCAAATCATAACCAAAGGTTTGAGCAATCCTTCAGGGTTAGAAAGATTTGCACCGATGCTGATATCATCCAACAATTTCAAGAAAAGTGGGACAGCGAAGAAGCTGCTGTCGTAAAGTCCATTAATGAGTGTGGGTCTATGAGTACATTGGTGGGGAAAGGGAAAGATATGTTGATTTCTGGATCTTCAAATGTGATGAATGAGGACTGTGAGAGTTTGTCTGCAAGTGATGTAAAAGGAAAAGGGGTCTTTGTTGAAGCAACACAAGTTGGTGAATTTACCCAAGATTTAATGAACAAATTTGTTGATGCTGTGGTGGATCTTAGTGATGATGGTAGCCCCACTTTAGTGAAAAACAACTCTGTTTCTGTTGTTAGTGAAAAAGTTTCTGTCCCAGCTAAGAGTGATGAAGTATTTGCAACACCTGCTGTCAAAGGTCAGCGCAAAAAATCTGTGGCTAAGCGTGTTTCTCCTAAGAGCAATGAAGTTGATGAGGATGACAATGCTCCAATCAAGCAGTTGAAAAGGCCTATTAAGATTGAAAAAATTTGA 1785 0.3798 MALSIANGTDFAKVSEINSDKAVWNVKAKVIRLWQVSDFNRNTLPFSIEMVLLDSHGDRIHATIKKTLIYKFKNEIVEGRTYAFENLGVSNNGGAYRTTRHPYKFNFQFNSLVQRLSNFEISKSPFKFVPIAEIAGGSYDTDYLCDVIGLLTGVGQEREVTNQNGTTTKLNVIALEADGSKIQCTLFGNYVDELNGFLGAGDCNNAIVIMQFAKAKNFQDKIHIQNCMNCSVLIFNSSCAESVAFKSSLSENVDSPSPMALTQLGCESRVEPKDEFLNHSRRITLQSLRDAGCEGFHVVAATIKKVLNPDSFWYTACVCNKAVIPDSKMFYCEKCNKHVVRVFPRFCIKVRVMDNTDSAIFVIFDKDASSLFDLTCADMVHAIQTGAQAGVVPALLDTLVDKTWLFKVESKANHNQRFEQSFRVRKICTDADIIQQFQEKWDSEEAAVVKSINECGSMSTLVGKGKDMLISGSSNVMNEDCESLSASDVKGKGVFVEATQVGEFTQDLMNKFVDAVVDLSDDGSPTLVKNNSVSVVSEKVSVPAKSDEVFATPAVKGQRKKSVAKRVSPKSNEVDEDDNAPIKQLKRPIKIEKI 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00851 594 CDD RPA1_DBD_C 299 427 IPR047192 -
Trre4g00851 594 MobiDBLite consensus disorder prediction 566 594 - -
Trre4g00851 594 SUPERFAMILY Nucleic acid-binding proteins 10 118 IPR012340 -
Trre4g00851 594 CDD RPA1_DBD_A_like 26 113 - -
Trre4g00851 594 SUPERFAMILY Nucleic acid-binding proteins 294 427 IPR012340 -
Trre4g00851 594 Pfam Domain of unknown function DUF223 49 144 IPR003871 -
Trre4g00851 594 Gene3D - 271 440 IPR012340 -
Trre4g00851 594 SUPERFAMILY Nucleic acid-binding proteins 126 252 IPR012340 -
Trre4g00851 594 Gene3D - 9 115 IPR012340 -
Trre4g00851 594 MobiDBLite consensus disorder prediction 555 594 - -
Trre4g00851 594 CDD RPA1_DBD_B_like 146 249 - -
Trre4g00851 594 Pfam Replication factor-A C terminal domain 298 426 IPR013955 -
Trre4g00851 594 Gene3D - 119 255 IPR012340 -
Trre4g00851 594 PANTHER OS03G0429900 PROTEIN 12 436 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00851 Trre-Chr4 6432929 6435593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00851 46 427 Core DNA Replication Machinery Family AT5G08020 23.810 1.88e-14 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00851 - - tpra:123915358 739.184