Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00850 ATGTCATTTTTTAGTGTCAAAAACTTCTTCCAGAGGTTCTGGTTGGATGAAATGGAGATGGGAAGTTATACACATAGCAGCTTTTTGTCTAGTGATCTTCTACCTTCTCTTGGCGCTCAAGTAAACCAGGAAACTAAACCACGAAAATACGTAATCTACCCATTCAATCCTCATTATAGGGCTTGGGAGTTGTTACTGGTTATTCTAGTCATATACTCAGCTTGGATATGCCCCTTTGAGTTTGCCTTTCTGACTTATAAGGAAGATGGACTATTCATCGTAGACAACATTGCCAATGGCTTCTTCGCCATCGACATAGTGCTTACATTCTTCGTTGCATACCATGATAAGGATTCTTATCTTCTCATTGATGATCCAAAGAAAATTGCAATCAGGTACATATCCACCTGGTTTGCTTTGGATATTTGCTCAACAGCCCCACTTGAGTCCATTAGCCTCCTCTTCATTCATCATAACAGTGAGCTTGGTTTCAAAGTTCTTAACATGTTGCGACTATGGCGTCTTAACCGAGTCAGTTCTCTGTTTGCAAGACTCGAAAAGGACATTCGCTTCAATTATTTTTGGGTTAGATGCACAAAGCTCTTTGCTGTAACCTTGTTCGCAGTGCACTGTGCAGGATGCTTTAACTATCTAATTGCAGATGTGTATCCTGATTCCAGAAAAACTTGGATAGGTGCTATGTACCCAAATTTTAAAGAAGAAAGTCTTTGGGACAGATATGTAACTTCAATTTACTGGTCCATCGTCACACTTACTACAACCGGCTACGGAGATTTACATGCAGAGAACACCATAGAGATGCTGTTTGATATCACTTACATGCTGTTCAACTTGGGTTTAACATCATACATCATTGGAAACATGACTAACCTTGTAGTTCATTGGACGAGCCGCACCCAAGATTTTCGGGATACAGTCAAAGCAGCTTCTGAGTTTGCTTCAAGAAATCATCTGCCACATCGCGTGCACAATCAAATGTTGGCGCACATATGTTTGAGGTTTAAAACAGAAGGAATGAAGCAGCAAGAAACATTAAATGATCTTCCAAAGGCAATTCGTTCAAGCATCGCACACCATCTCTTTTTTCCTGTTGTGCAGAAGGTCTACCTCTTTCAAGGTGTCTCCCATGACTTCCTACTCCAACTGGTTTCAGAGATGAAAGCTGAGTATTTCCCGCCAAAGGAAGATGTGATACTGCAAAATGAATCTCCTACAGACCTTTATGTGCTGGTTTCAGGAGCAGTGAATCTCGTTCACTACATTGATGGGAAAGATCAAGTGGTTCTTGACAAGGCAACTGCAGTAGATATATTTGGAGAGTTTGGAGTTTTATATCATGTACCGCAGCCTTTCACAGTTCGAACCACAGAGCTTTCTCAGATATTAAGACTCAACAGTACATCCTTAATGAATGTTTTACAAGCAAATCCAGGGGATGCACAGATTGTAATGGATAACCTTTCATTGAGGTTAAGGGAGCGTGAAGGGTTCGTCTCTGAATATCCACACACAGATCTTGGATTGGTTCTGCAGAAACTGCTTCATGGAGTTCCTAATAACATGATACCTGAAGACGGCAAAAGAGATCTCCATACCACTACACTGACTGCACATAAGGGGAAACTGGGCATTGTTGAAATTCTGCTTGAAAGAGATGCAAAAGCACATAACACAAATGCCATAGGGTGGACACAAAAAGCTCTAGTACAACAGTTACCAAACAAGAGCTTTTCTGACCATACAATGAATTATGAAAGCCAGAAGAAATCAGATGAACATAGAATCGAGATTGTGGAGCCACAAATCCATAAACTTGGAAGGAATGGCTCAACCAGAAACAGTAGACAGGATGGTATTAGAACTATTAACTTCCCAGTAGAGAAAAGAAGTAGCTCACATGGACAACACGGAAAACTGATTATTCTACCTGATTCATTAGAAGAGCTGCTCAAAATTGCTGGTGAAAAATTTGGCGGCTTCAACCCCACAAAAGTAATTAATAGAGAGAATGCAGAGATAGACGACATTGATGTCGTTCGAGATGGTGATCATCTCTTTTTCCTTGGAAGCGAAAGTGACAATTTGAGTTTGTGA 2115 0.4057 MSFFSVKNFFQRFWLDEMEMGSYTHSSFLSSDLLPSLGAQVNQETKPRKYVIYPFNPHYRAWELLLVILVIYSAWICPFEFAFLTYKEDGLFIVDNIANGFFAIDIVLTFFVAYHDKDSYLLIDDPKKIAIRYISTWFALDICSTAPLESISLLFIHHNSELGFKVLNMLRLWRLNRVSSLFARLEKDIRFNYFWVRCTKLFAVTLFAVHCAGCFNYLIADVYPDSRKTWIGAMYPNFKEESLWDRYVTSIYWSIVTLTTTGYGDLHAENTIEMLFDITYMLFNLGLTSYIIGNMTNLVVHWTSRTQDFRDTVKAASEFASRNHLPHRVHNQMLAHICLRFKTEGMKQQETLNDLPKAIRSSIAHHLFFPVVQKVYLFQGVSHDFLLQLVSEMKAEYFPPKEDVILQNESPTDLYVLVSGAVNLVHYIDGKDQVVLDKATAVDIFGEFGVLYHVPQPFTVRTTELSQILRLNSTSLMNVLQANPGDAQIVMDNLSLRLREREGFVSEYPHTDLGLVLQKLLHGVPNNMIPEDGKRDLHTTTLTAHKGKLGIVEILLERDAKAHNTNAIGWTQKALVQQLPNKSFSDHTMNYESQKKSDEHRIEIVEPQIHKLGRNGSTRNSRQDGIRTINFPVEKRSSSHGQHGKLIILPDSLEELLKIAGEKFGGFNPTKVINRENAEIDDIDVVRDGDHLFFLGSESDNLSL 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00850 704 PRINTS EAG/ELK/ERG potassium channel family signature 72 79 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre4g00850 704 PRINTS EAG/ELK/ERG potassium channel family signature 95 105 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre4g00850 704 PRINTS EAG/ELK/ERG potassium channel family signature 273 284 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre4g00850 704 PRINTS EAG/ELK/ERG potassium channel family signature 291 300 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre4g00850 704 PRINTS EAG/ELK/ERG potassium channel family signature 247 264 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre4g00850 704 FunFam Potassium channel KAT2 365 502 - -
Trre4g00850 704 FunFam Potassium channel KAT3 61 301 - -
Trre4g00850 704 Pfam KHA, dimerisation domain of potassium ion channel 634 694 IPR021789 -
Trre4g00850 704 Gene3D Helix hairpin bin 301 367 - -
Trre4g00850 704 ProSiteProfiles KHA domain profile. 627 704 IPR021789 -
Trre4g00850 704 SUPERFAMILY cAMP-binding domain-like 304 499 IPR018490 -
Trre4g00850 704 ProSiteProfiles cAMP/cGMP binding motif profile. 377 480 IPR000595 -
Trre4g00850 704 PANTHER POTASSIUM CHANNEL AKT1 25 502 IPR045319 GO:0005249|GO:0006813
Trre4g00850 704 SUPERFAMILY Voltage-gated potassium channels 54 300 - -
Trre4g00850 704 Gene3D Jelly Rolls 370 508 IPR014710 -
Trre4g00850 704 CDD CAP_ED 377 491 IPR000595 -
Trre4g00850 704 Gene3D - 61 300 - -
Trre4g00850 704 SMART cnmp_10 377 495 IPR000595 -
Trre4g00850 704 Pfam Ion transport protein 60 307 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Trre4g00850 704 Pfam Cyclic nucleotide-binding domain 397 482 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00850 Trre-Chr4 6413297 6417012 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00850 1 694 Ion Channels AT5G46240 57.584 0.0 837
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00850 K21867 - gmx:100783528 1037.33