Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00818 ATGAGGAGGAGAAATTGTAACTTGGAACTTTCCCTTTTTCCTATCTACAATTCTACCATGGTAAAAGAAGAAGAAGATGATTGTGATGAAGAGAGTAGTACAATGCAAAATCACCAACATGCGCCGCTCACCATTTTCTATGATGGCAACATGTGTGTTACTACTGATGTTACCGAGTTTCAGGCTAAATCCATCTTAATGCTAGCAAATAAAAAGGTACAAGAAAAAGTGAAGACACCAACAGGGTCAGTACCAACAACACCAACAATTGTACAATCTCCTCATCAATTGTATAGCCCTGGGACTGGTCTTTCAATGAAGAGATCTTTGCAACGTTTTTTACAGAAGAGAAAGAATCGAATCCAAGAAGCATCTCCATATAATCACTAG 390 0.3821 MRRRNCNLELSLFPIYNSTMVKEEEDDCDEESSTMQNHQHAPLTIFYDGNMCVTTDVTEFQAKSILMLANKKVQEKVKTPTGSVPTTPTIVQSPHQLYSPGTGLSMKRSLQRFLQKRKNRIQEASPYNH 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00818 129 Pfam tify domain 39 70 IPR010399 -
Trre4g00818 129 SMART tify_2 36 71 IPR010399 -
Trre4g00818 129 Pfam Jas motif 107 127 IPR018467 -
Trre4g00818 129 ProSiteProfiles Tify domain profile. 36 71 IPR010399 -
Trre4g00818 129 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 26 128 IPR040390 -
Trre4g00818 129 MobiDBLite consensus disorder prediction 76 102 - -
Trre4g00818 129 MobiDBLite consensus disorder prediction 75 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00818 Trre-Chr4 6171814 6173959 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00818 3 127 Tify Gene Family AT1G30135 40.945 1.05e-22 84.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Trre4g00818 tify 3.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00818 - - gmx:100803886 161.384