Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00814 ATGGCTGAAATCAACAATGCAACGCAATCCAACACTAAAAAGAGAAAATTTTGCGAAACCAAGAAAGTGAAAAAGTCGAACAAGTCTGACATGTTCTCAAAACGTAAAATTAGTCTTTTCAACAAAGTAACAGAGCTCTCTGTTTTGTGTAAGGTAAAAACCGCACTCATCGTCACATCATCCAACAAGGAACTCCATGCATGTGGCTATCCTAATTGTGAGGCAGTCATTCAACAATTTTTGACCGGAAAAGATAATGTGGAAGACAACGAGAAAAAGAAGCAAGAGGAGATTGTTGAAACCCTAAGGCTCGAATACGAGGCAATTGAAGATAAACTTAAAGAAGAAGAGAAGAATTTAAAAGCTATCATTGATGCGAAAGATAAGAGTGATTCTATTTTCCCTTGTTGGTGGGGTGATTCTATTGATGATATGGATTTAGAGTCTCTTGAAGAATTTAAATCTTCTTTACAAAATTTGAGACTTAATTTAGGTTCAGCAATTGACCAAAAGAAGTTAATGTTTGCATGA 531 0.354 MAEINNATQSNTKKRKFCETKKVKKSNKSDMFSKRKISLFNKVTELSVLCKVKTALIVTSSNKELHACGYPNCEAVIQQFLTGKDNVEDNEKKKQEEIVETLRLEYEAIEDKLKEEEKNLKAIIDAKDKSDSIFPCWWGDSIDDMDLESLEEFKSSLQNLRLNLGSAIDQKKLMFA 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00814 176 SUPERFAMILY SRF-like 14 82 IPR036879 GO:0003677|GO:0046983
Trre4g00814 176 Coils Coil 92 126 - -
Trre4g00814 176 Gene3D - 24 107 IPR036879 GO:0003677|GO:0046983
Trre4g00814 176 SMART madsneu2 13 71 IPR002100 GO:0003677|GO:0046983
Trre4g00814 176 ProSiteProfiles MADS-box domain profile. 25 72 IPR002100 GO:0003677|GO:0046983
Trre4g00814 176 Coils Coil 150 170 - -
Trre4g00814 176 PANTHER MADS BOX PROTEIN 19 164 - -
Trre4g00814 176 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 24 67 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00814 Trre-Chr4 6137975 6138505 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00814 12 161 Type I MADS-box Gene Family AT5G60440 29.747 9.15e-17 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre4g00814 SRF-TF 1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00814 - - tpra:123896833 213.772