Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00809 ATGGAGAATGAGATTGAACAATGTAAGTTTCCAAGACTTGGAAATGTCCTAAACAGTTCAATGAATTCTGGTAGAAAGAAAAATGTTGGAGGAAGTGATTTTCAAAGTAGTAGTAGCTGGCAACATCAACAACAAAACTCTTCAAGAATTGTTAGAGTTTCTAGAGCTTCTGGTGGAAAAGATAGACATAGTAAAGTAATGACTTCGAAGGGTTTAAGAGATCGAAGAGTTAGGTTATCGGTTACAACAGCTATTCAATTCTATGATATTCAAGATAGACTTGGTTATGATCAACCAAGTAAAGCTGTTGATTGGTTAATCAAAGCTGCTTCTGATTCTATCTCAGAACTTCCTTCTCTCAATAGTACATTCATGCAAACCGGTCCGAAACAACCAAGTTATGAGAATCAAAGCGAGTATCAGAAACCGAAACCGAAACAGAAACAGAACCATAACATCAACAATAACAGTAACAACTTTTGTTTGTCTAAGTCTGGTTGTAGTAGTACTTCTGAGACAAGTAAAGAGAATGAGTGTAACATCATTGGACAAGAACAAAAACATCATCAGAATATGTCTCAAACTGGTTCTTTCACTGAGTTACTTACTGGTGGAATTGGTAGTAGTACTGTAACAAGTACTAATGGATCAATTCATGATCAGATTCATCATCATCATGGTGGTTTCTCAGGACATTCACATTCTCATTCACTTCAAGTTTCACCATTTAATGGTGAAAATGAAAACAACTCAGATATTACTCAGTTGCAGCATTTTCCATTCATGTCATCATCTTCTGATCAACAAAATGGGAATCATGATAATTATAATCTCAACTTCACGATATCTTCTTCGGGCCTTGTTGGTTACAATAGGGGGACCCTTCAGTCCAATTCAATTTTACCTCATTTTCAGAGGTTTTCACCTGTTATGGATCATGGATCATCAACATCATCATCATCCAATAATCTACCTTTCTTTATGGGAGCTTCTGTTGCTCCTTCTGCTGCTGCAACCATGGATCAACAACATCTTCAATTCTCACCTCTCTTTGATGCTCGTTTGCAACTTTTCTATGGTGATGGAAGTCGGCATTCGGATCGAAAGGAAAAATGTAATAAGAACTGA 1128 0.3661 MENEIEQCKFPRLGNVLNSSMNSGRKKNVGGSDFQSSSSWQHQQQNSSRIVRVSRASGGKDRHSKVMTSKGLRDRRVRLSVTTAIQFYDIQDRLGYDQPSKAVDWLIKAASDSISELPSLNSTFMQTGPKQPSYENQSEYQKPKPKQKQNHNINNNSNNFCLSKSGCSSTSETSKENECNIIGQEQKHHQNMSQTGSFTELLTGGIGSSTVTSTNGSIHDQIHHHHGGFSGHSHSHSLQVSPFNGENENNSDITQLQHFPFMSSSSDQQNGNHDNYNLNFTISSSGLVGYNRGTLQSNSILPHFQRFSPVMDHGSSTSSSSNNLPFFMGASVAPSAAATMDQQHLQFSPLFDARLQLFYGDGSRHSDRKEKCNKN 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00809 375 Pfam TCP family transcription factor 58 185 IPR017887 -
Trre4g00809 375 ProSiteProfiles TCP domain profile. 59 117 IPR017887 -
Trre4g00809 375 MobiDBLite consensus disorder prediction 119 157 - -
Trre4g00809 375 MobiDBLite consensus disorder prediction 55 71 - -
Trre4g00809 375 MobiDBLite consensus disorder prediction 232 251 - -
Trre4g00809 375 MobiDBLite consensus disorder prediction 210 251 - -
Trre4g00809 375 MobiDBLite consensus disorder prediction 16 71 - -
Trre4g00809 375 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 25 296 IPR005333 GO:0003700
Trre4g00809 375 MobiDBLite consensus disorder prediction 16 53 - -
Trre4g00809 375 MobiDBLite consensus disorder prediction 119 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00809 Trre-Chr4 6088504 6089631 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00809 38 375 TCP Transcription Factor Family AT4G18390 37.755 4.65e-48 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Trre4g00809 TCP 2.6e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00809 - - psat:127079830 425.631