Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00807 ATGGCTTTCGATCCGTTCGTTTGGTATTGTAAGCCAGTTGAAAATGGAGTGTGGACAAGAACAGTTCAGAATGCCTTTGGTGCTTACACTCCTTGCGCGGTTGACTCTTTGGTGATTGGTATTTCTCATTTGGTGATTCTAGGGTTGTGTATTTACCGCATATGGTTGATTAAGAAGGATTTTACAGTCAAGAGGTTTCGTTTAAGGTCGAATATCTACAATTATGTTTTGGGGATTTTGGCTGCATATTCTGTGGCGGAGCCTTTATACAGATTGATCATGGGAGTATCAATTCTAAATTTAGACGGGCAGACTCAACTTGCTCCGTTTGAGATAGTTTCACTGATTGTTGAGGCTATTGCTTGGTGCTCTATGCTGATTTTGCTTGCGATTGAAACTAAAGTCTACGTCTATGAATTCCGATGGTTTGTCCGATTTGGTTTGGTTTATGCTGCTGTAGGGGGTGCTGTTATGTTCACTTTCATCATTTCTGTCCAGGAACTTTATAGCAGATCGGTGTTGTATTTGTACATCAGTGAGGTGGTCTGCCAGGTTTTGTTTGGAATACTTTTGCTTGTGTATGTCCCTGCTTTGGATCCATATCCAGGTTATACCCCCATTGGTAATGAAACGGTTACTGATGCTGCGTATGATGAACTCCCTGAAGGAGAGTTGATATGTCCTGAAAGGCGAGCTAACTTATGGTCAAGTATAGTTTTTTCTTGGATGAATCCCATTATGAAACTAGGATATGAAAGACCACTTACAGAGAAAGATATATGGAAACTAGATACATGGGAGCGGACAGAGACATTGCACAATACATTCCAGAAATGCTGGACCGAGGAATCTCAGAAATCAAAACCTTGGCTTTTGAGAGCATTAAATTCAAGCCTTGGAGGAAGGTTTTGGTTCGGAGGCATTTTCAAGATTGGAAATGATCTTTCCCAATTTACAGGCCCACTTATATTGAACCAGCTTCTACAGTCTATGCAAAATGGTGATCCAGCCGGAATGGGCTACATTTATGCCTTCGCAATATTTGTCGGAGTGGTCTTTGGGGTGTTATGTGAAGCTCAATATTTTCAGAATGTCATGCGTGTTGGATATCGTCTGAGATCAACGCTGGTGGCTGCAGTATTTCGCAAGTCTCTGAGGCTTACTCATGAAGCACGAAAGCAATTTGCATCTGGAAAAATAACCAACTTGATGACTACTGATGCTGAGTCACTTCAGCAAATATGCCAATCACTTCACACGTTGTGGTCAGCTCCCTTTCGAATTACTATTGCTATGGTCCTTCTTTACCAAGAACTAGGTGTTGCTTCCCTTCTTGGTGCTTTGTTGCTAGTTCTTATGTTTCCACTACAGACAGTAATCATCAGCAGAATGCAGAAGCTGTCTAAGGAAGGATTACAACGCACAGACAAGAGAATCGGTCTCATGAATGAAATTTTGGCTGCTATGGACACTGTAAAATGTTATGCGTGGGAAAGTAGTTTCCAGTCTAGAGTTGAGAATGTACGAAATGATGAATTATCATGGTTTCGAAAAGCATCATTACTTGGAGCGTGTAATTCATTTATACTAAATAGCATTCCAGTTTTCGTAACTGTGATTTCATTTGGAGTGTTCACATTGCTTGGAGGGGATTTGACACCTGCAAGAGCTTTCACTTCTCTTTCTCTGTTTGCTGTGCTTCGATTTCCTCTCTTCATGCTTCCGAATATTATAACTCAGGTGGTTAATGCAAATGTATCGTTGAAACGTCTGGAGGAGTTGCTCTTAGCCGAAGAGAGAATACTTCTACCAAATCCACCTCTTGAACCAGGATTACCAGCCATCTCAATCAGGAATGGATACTTTTCTTGGGATGCAAAGGCGGATAGGGCAGCATTGTCAAACATAAATTTGGATATTCCTGTTGGTAGCCTAGTTGCTGTTGTTGGCAGCACGGGAGAAGGGAAGACGTCACTCATATCTGCAATGCTTGGAGAACTTCCTCCGATTGCAGATTCAACTGTTGTTATGAGAGGAACAGTAGCTTATGTACCTCAAGTTTCATGGATTTTTAATGCAACTGTACGGGATAACGTTTTGTTCGGTTCTGTCTTTGACCCAATAAGATATGAAAGGGCAATAGATGTGACTGAACTGCGACACGACCTTGAGTTACTGCCGGGCGGTGATCTTACTGAAATTGGTGAAAGAGGGGTAAACATCAGCGGTGGTCAGAAGCAGAGAGTATCCATGGCTAGAGCTGTCTACTCCAATTCTGATGTGCTCGTCTTTGATGACCCCCTAAGTGCTCTGGATGCACATGTGGCTAGACAGGTTTTTGATAAATGTATCAAGGGAGAATTGAGAGGGAAGACTCGGGTTCTTGTTACGAATCAGCTGCATTTCCTTTCACAGGTTGATAGAATCATTTTGGTCCATGAAGGTATGGTGAAGGAGGAAGGGACTTTTGAGGAACTCTCTAGCCAGGGGATTTTGTTCCAAAAGCTGATGGAAAATGCGGGTAAAATGGAGGAGTATGAAGAAGAAAAGGTAGATATTGAAGCTGCCGATCAAAAGTCCTCTTCAAAACCAGTGGTCAACGGAGCGGTTAATGATTATGCAAAGAGTGAAAGTAAACCAAAAGTTGGAAAATCTATCCTTATTAAACAGGAAGAACGGGAAACAGGTGTTGTCAGTCTGAATGTTCTAACGAGGTACAAAAATGCATTAGGAGGCACTTGGGTTGTTCTAGTACTATTTGGATGCTATATCTCAACCGAAGTGTTACGAATATCAAGTAGCACATGGTTAAGCCACTGGACTGATCAGAGTGCTGTAGAGGGTTATAATCCCGGCTTCTACAATCTCATATATGCAGCTCTATCATTTGGTCAGGTTTTGGTGACTTTAACAAATTCTTACTGGTTAATCATATCAAGTCTTTATGCTGCCAGAAGGTTGCACGAAGCCATGCTTCACTCCATCTTACGAGCTCCCATGGTCTTTTTCCACACAAATCCACTTGGAAGGGTCATCAACAGGTTTGCAAAAGATCTAGGTGACATCGATCGTAATGTAGCTCCATTCGTGAGCATGTTTTTAGGTCAAATTTCCCAACTTCTTTCGACCTTCATCCTGATAGGGATTGTAAGCACAATGTCCTTGTGGGCAATAATGCCATTGTTGGTATTGTTTTATGGAGCATATCTATACTATCAGAGCACTGCTCGTGAAGTAAAGCGATTGGATTCAATCAGCAGATCTCCTGTTTATGCGCAATTTGGGGAAGCACTAAATGGTCTATCAACAATCCGTGCTTACAAAGCTTACGATCGAATGGCTGATATAAACGGAAGATCCATGGACAACAACATTCGGTACACACTGGTCAACATAAGCGGAAACCGATGGCTTGCTATCCGATTGGAAACCCTAGGAGGCCTCATGATATGGTTCACTGCAACCTTCGCCGTGATGCAGAATGGTAGGGCAGAGAACCAGCAAGAATTTGCATCCACCATGGGATTACTTCTCAGTTACGCTTTGAATATTACCAGCTTGCTCACCGGTGTGCTCAGACTTGCAAGTTTGGCTGAGAATAGCTTAAATTCTGTTGAGCGGATTGGAACTTACATCGATTTGCCTTCAGAGGCTCCTTCTGTGATTGAAGATAATCGTCCTCCCCCTGGGTGGCCTTCCTCGGGCTCCATCAAGTTCGAAGAAGTTGTTCTTCGCTACAGGCCTGAACTTCCTCCTGTGCTTCATGGCCTATCTTTCACAATTTTTCCAAGCGATAAGGTTGGCATTGTTGGGAGGACTGGCGCAGGAAAATCCAGCATGCTAAATGCCTTGTTTCGAATTGTGGAATTGGAAAAGGGGAGAATATTAATTGATGATCATGATATTGCAAAGTTTGGGCTGGCTGATTTGCGGAAAGTTCTTGGCATTATACCACAATCTCCTGTTCTCTTTTCAGGAACTGTGAGGTTTAATCTTGATCCATTTACTGAACACAATGATGCTGACCTCTGGGAGGCTCTGGAGAGGGCACATTTGAAGGATGTGATACGGAGGAATTCTTTGGGGCTGGATGCTGAGGTATCCGAGGCGGGCGAGAACTTCAGTGTTGGACAAAGGCAACTGTTGAGTCTTGCCAGGGCTTTGTTGCGGAGATCTAAGATTTTAGTACTTGATGAGGCAACTGCAGCGGTTGATGTTAGAACAGATGCACTCATACAGAAAACAATCAGGGAGGAATTTAAATCCTGTACAATGCTCATTATTGCTCATCGCCTCAACACTATTATTGACTGTGATCGTGTTCTTTTGCTTGATGGAGGCAAGGTTCTTGAATATGATACCCCCGAGGAGCTCCTGTCAAATGAGGGCAGTGCTTTCTCTAAGATGGTGCAAAGTACAGGAGCTGCAAATGCCCAATACTTACGCAGCTTAGTACACGGTGGTGACAAGACAGAAAGAGAAGAGAACAAGAATCTGGATGGTCAGAAAAAATGGCTAGCTTCTTCTCGGTGGGCTGCTGCAGCCCAGTTTGCTCTTGCTGTGAGTCTCACTTCGTCACAGAATGACCTACAACGATTGGAAGTAGAAGATGAGGATAGTATTCTCAAGAAGACAAAGGATGCTCTGATAACTTTGCAGGGTGTTTTGGAAAGGAAGCATGATAAAGAAATTGAGGAATCTTTAAACCAATGCCAAATATCCTCTGAGGGATGGTGGACATCGCTTTACAAGATGATTGAAGGTCTTGCTATGATGAGCAGATTGGCCAGGAACAGGCTCCATCAATCAGATTACGGTTTTGAGAACAGCTCAATTGACTTTGATCAAATTGATATGTAG 4860 0.4286 MAFDPFVWYCKPVENGVWTRTVQNAFGAYTPCAVDSLVIGISHLVILGLCIYRIWLIKKDFTVKRFRLRSNIYNYVLGILAAYSVAEPLYRLIMGVSILNLDGQTQLAPFEIVSLIVEAIAWCSMLILLAIETKVYVYEFRWFVRFGLVYAAVGGAVMFTFIISVQELYSRSVLYLYISEVVCQVLFGILLLVYVPALDPYPGYTPIGNETVTDAAYDELPEGELICPERRANLWSSIVFSWMNPIMKLGYERPLTEKDIWKLDTWERTETLHNTFQKCWTEESQKSKPWLLRALNSSLGGRFWFGGIFKIGNDLSQFTGPLILNQLLQSMQNGDPAGMGYIYAFAIFVGVVFGVLCEAQYFQNVMRVGYRLRSTLVAAVFRKSLRLTHEARKQFASGKITNLMTTDAESLQQICQSLHTLWSAPFRITIAMVLLYQELGVASLLGALLLVLMFPLQTVIISRMQKLSKEGLQRTDKRIGLMNEILAAMDTVKCYAWESSFQSRVENVRNDELSWFRKASLLGACNSFILNSIPVFVTVISFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNIITQVVNANVSLKRLEELLLAEERILLPNPPLEPGLPAISIRNGYFSWDAKADRAALSNINLDIPVGSLVAVVGSTGEGKTSLISAMLGELPPIADSTVVMRGTVAYVPQVSWIFNATVRDNVLFGSVFDPIRYERAIDVTELRHDLELLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVLVFDDPLSALDAHVARQVFDKCIKGELRGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEELSSQGILFQKLMENAGKMEEYEEEKVDIEAADQKSSSKPVVNGAVNDYAKSESKPKVGKSILIKQEERETGVVSLNVLTRYKNALGGTWVVLVLFGCYISTEVLRISSSTWLSHWTDQSAVEGYNPGFYNLIYAALSFGQVLVTLTNSYWLIISSLYAARRLHEAMLHSILRAPMVFFHTNPLGRVINRFAKDLGDIDRNVAPFVSMFLGQISQLLSTFILIGIVSTMSLWAIMPLLVLFYGAYLYYQSTAREVKRLDSISRSPVYAQFGEALNGLSTIRAYKAYDRMADINGRSMDNNIRYTLVNISGNRWLAIRLETLGGLMIWFTATFAVMQNGRAENQQEFASTMGLLLSYALNITSLLTGVLRLASLAENSLNSVERIGTYIDLPSEAPSVIEDNRPPPGWPSSGSIKFEEVVLRYRPELPPVLHGLSFTIFPSDKVGIVGRTGAGKSSMLNALFRIVELEKGRILIDDHDIAKFGLADLRKVLGIIPQSPVLFSGTVRFNLDPFTEHNDADLWEALERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRVLLLDGGKVLEYDTPEELLSNEGSAFSKMVQSTGAANAQYLRSLVHGGDKTEREENKNLDGQKKWLASSRWAAAAQFALAVSLTSSQNDLQRLEVEDEDSILKKTKDALITLQGVLERKHDKEIEESLNQCQISSEGWWTSLYKMIEGLAMMSRLARNRLHQSDYGFENSSIDFDQIDM 1619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00807 1619 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 917 1200 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre4g00807 1619 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 304 583 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre4g00807 1619 CDD ABC_6TM_ABCC_D1 305 587 IPR044746 GO:0140359
Trre4g00807 1619 CDD ABC_6TM_ABCC_D2 916 1212 IPR044726 GO:0140359
Trre4g00807 1619 Coils Coil 836 856 - -
Trre4g00807 1619 FunFam ABC transporter C family member 2 880 1218 - -
Trre4g00807 1619 CDD ABCC_MRP_domain1 615 815 - -
Trre4g00807 1619 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1237 1471 IPR003439 GO:0005524
Trre4g00807 1619 ProSitePatterns ABC transporters family signature. 741 755 IPR017871 GO:0005524|GO:0016887
Trre4g00807 1619 SUPERFAMILY ABC transporter transmembrane region 914 1217 IPR036640 GO:0005524|GO:0016020
Trre4g00807 1619 Pfam ABC transporter 1254 1402 IPR003439 GO:0005524
Trre4g00807 1619 FunFam ABC transporter C family member 2 279 600 - -
Trre4g00807 1619 Pfam ABC transporter 633 768 IPR003439 GO:0005524
Trre4g00807 1619 Gene3D - 610 864 IPR027417 -
Trre4g00807 1619 Pfam ABC transporter transmembrane region 304 571 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre4g00807 1619 Pfam ABC transporter transmembrane region 917 1159 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre4g00807 1619 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 612 838 IPR027417 -
Trre4g00807 1619 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1227 1468 IPR027417 -
Trre4g00807 1619 Gene3D - 1220 1473 IPR027417 -
Trre4g00807 1619 Gene3D ABC transporter type 1, transmembrane domain 271 601 IPR036640 GO:0005524|GO:0016020
Trre4g00807 1619 Gene3D ABC transporter type 1, transmembrane domain 881 1218 IPR036640 GO:0005524|GO:0016020
Trre4g00807 1619 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 615 839 IPR003439 GO:0005524
Trre4g00807 1619 SUPERFAMILY ABC transporter transmembrane region 289 595 IPR036640 GO:0005524|GO:0016020
Trre4g00807 1619 ProSitePatterns ABC transporters family signature. 1374 1388 IPR017871 GO:0005524|GO:0016887
Trre4g00807 1619 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 229 1477 - -
Trre4g00807 1619 CDD ABCC_MRP_domain2 1235 1455 - -
Trre4g00807 1619 SMART AAA_5 642 820 IPR003593 GO:0016887
Trre4g00807 1619 SMART AAA_5 1263 1456 IPR003593 GO:0016887
Trre4g00807 1619 FunFam ABC transporter C family member 2 609 855 - -
Trre4g00807 1619 FunFam Multidrug resistance-associated protein member 4 1221 1473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00807 Trre-Chr4 6062205 6076256 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00807 595 826 Calmodulin-binding Proteins AT2G36910 26.800 1.11e-21 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00807 - - gmx:100795004 2836.21