LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre4g00806	ATGTTAGAGAGTGGTAGTAGTGGACGTGATTCTGGAATGAGTTTAGAAACAGTTAATTCCAATACACAGCGAACTTCATTGAGCAGCGGAACTGAAAGCATCTGCAGCACAAGTTTCAGCCGTCTCTCCTTTGAGCTTCTTCCATCATCATCTTCACCGGAGTCTTTCTCCATCAAACCTCACCGTTCCTCTGATTTTGCCTACTCCGCCATCCGTAAATCCGGTCTCACTTTCCGTGATTTTCATCTTCTCCGTCGTATAGGCTCCGGTGACATAGGTACAGTTTACCTCTGTCGTCTCCGTGACTCCTCTGTAAACTATCTCGACGATGAGGATCCTTCGTTTTACTATGCTATGAAGGTTGTTGATAAAGATGCTGTTGCTCTTAAGAAAAAATCACACAGAGCAGAAATGGAGAGAAAGATTATCAAGATGCTTGATCATCCTTTTCTTCCTAGTTTATATGCAGAGTTTGAAGCTTCTCATTATTCATGCATTGTTATGGAGTATTGCTCCGGTGGAGATTTACACTCTCTCCGTCATCGTCACCACCGTAACCGTTTTTCTCTCTCCTCAGCAAGATTTTACGCGGCGGAGGTACTGGTGGCATTGGAATACTTGCACATGTTAGGAATAATCTACAGAGATCTAAAGCCGGAAAATGTGTTAGTAAGATCAGACGGTCACATCATGTTATCTGATTTTGATCTATCACTAATCTCTCACGCAATCCCAGCCGTTGAATCATCACCAGATTGTTCTTCTATTTATGATCCACCCGAAGTTTCCCGCACTCGTCCAAATTCCATCCCTACTCCTTTCAAATGTCTCTCACAAGGACTTTTCCGGTCTAAAAAGGTTCAAACATTTCAATCAAACCGGAATCGGCTTTTTGTAGCTGAACCGGTTGGAGCTAGATCTTGTTCATTCGTTGGAACACACGAATACGTTTCACCAGAAGTTGCTTCTGGAAACTCTCACGGTAACGCTGTTGATTGGTGGTCGTTTGGAATATTCATCTACGAGATGGTGTACGGTAGAACACCGTTTGCGGGACCATCAAACGAAGCAACGTTGAGGAACATTATTAAAAAGCCTCTAAGTTTTCCTACTGCCACGCCTTCTAGTGCGCTTGAAATGCACGCGCGGGATCTTGTTGCGGGTTTGCTTAACAAAGATCCGAACCGGAGACTCGGTTCCAAACGAGGCGCGGCTGATGTTAAGATGCATCCATTTTTTTTGGGGCTTAATTTGGCTTTGATACGGATGGTGACGCCGCCGGAGGTTCCTGGTTTAAGAAGGCAGAAAACGACGCCGTTGAAGAATGGGAATAGAAGTTCAAGTAAACAATTCCCTTCTTCGTCGTTTGATTACTTTTGA	1380	0.4413	MLESGSSGRDSGMSLETVNSNTQRTSLSSGTESICSTSFSRLSFELLPSSSSPESFSIKPHRSSDFAYSAIRKSGLTFRDFHLLRRIGSGDIGTVYLCRLRDSSVNYLDDEDPSFYYAMKVVDKDAVALKKKSHRAEMERKIIKMLDHPFLPSLYAEFEASHYSCIVMEYCSGGDLHSLRHRHHRNRFSLSSARFYAAEVLVALEYLHMLGIIYRDLKPENVLVRSDGHIMLSDFDLSLISHAIPAVESSPDCSSIYDPPEVSRTRPNSIPTPFKCLSQGLFRSKKVQTFQSNRNRLFVAEPVGARSCSFVGTHEYVSPEVASGNSHGNAVDWWSFGIFIYEMVYGRTPFAGPSNEATLRNIIKKPLSFPTATPSSALEMHARDLVAGLLNKDPNRRLGSKRGAADVKMHPFFLGLNLALIRMVTPPEVPGLRRQKTTPLKNGNRSSSKQFPSSSFDYF	459

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre4g00806	459	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	212	224	IPR008271	GO:0004672\|GO:0006468
	Trre4g00806	459	ProSiteProfiles	Protein kinase domain profile.	81	413	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre4g00806	459	MobiDBLite	consensus disorder prediction	430	459	-	-
	Trre4g00806	459	Gene3D	Transferase(Phosphotransferase) domain 1	171	242	-	-
	Trre4g00806	459	FunFam	protein kinase PINOID 2	79	170	-	-
	Trre4g00806	459	FunFam	serine/threonine-protein kinase D6PK-like	305	431	-	-
	Trre4g00806	459	MobiDBLite	consensus disorder prediction	437	459	-	-
	Trre4g00806	459	MobiDBLite	consensus disorder prediction	1	31	-	-
	Trre4g00806	459	Pfam	Protein kinase domain	307	413	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre4g00806	459	Pfam	Protein kinase domain	81	265	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre4g00806	459	PANTHER	FLIPPASE KINASE 1-RELATED	26	434	-	-
	Trre4g00806	459	Gene3D	Phosphorylase Kinase; domain 1	79	170	-	-
	Trre4g00806	459	SMART	serkin_6	81	413	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre4g00806	459	SUPERFAMILY	Protein kinase-like (PK-like)	52	438	IPR011009	-
	Trre4g00806	459	FunFam	protein kinase PINOID	171	239	-	-
	Trre4g00806	459	Gene3D	Transferase(Phosphotransferase) domain 1	306	431	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre4g00806	Trre-Chr4	6032022	6033524	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre4g00806	10	459	AGC Kinase Gene Family	AT2G34650	66.154	0.0	572

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Trre4g00806		Pkinase	1.4e-34	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre4g00806	-		-	gmx:100795536	648.662