LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre4g00802	ATGGCTTCTTTTATGCAACCCCTTCACAAGGCACCATGGCTTCTTTTATGCAACCCCTTCACAAGGGTCATTCCAAAGTTTGAATTTTTTCGATCCAAAGGTGCTTCTAAATCTGACATTGTTAAACTTGTCACCAAGGACCCTATGGTAATGGTACTTTCTCCAAGTTTGGAGGATCATATAGTCCCAACCTATAAATTGTTGTATAGATTATTGCAATCGGACAAAGAAACTATTGCTTGCGCGATTCAAAATCCGTATTCAATTAGTGACTGCCGTGTGCCATATAACATTGCATTGTTGGTTGAGAACGGAGTGAAGGACTCAACCATTGTAAGATTGCTTCACAAGAGTTCTCGGTCATTGAATACAAATAGAAATTACATGGTAAAGTTGGTGAAGGAATTGAAGGATATGGGTTTTAGGCCTTCAAAAGTAAGCTTTGGTACAGCATTGGAAGCGAAACTATCCGTATATAAAATATTGTGGAACGAGAAAGTTGATGCCTTTAAGAAATGGGGGTGGTCTGATGAAGATGTTATGGAAGCATTTAGAAGGCAACCTCAATGTATGTTAACATCCATTGATAAAATTAATTTATCGATGAGCTTTTGGGTCGATCAGTTGGGTTGGGATGTGCTTGCCCTTGCAAAAAGACCGTCGGTTTTTACATATAGTTTGGAAAAAAGGATCATTCCAAGGACCTCAATAGTGCAATTTCTGTTGAAGAAAGGTTTGCGAAAAAAGACTGCAAGCTTAACTTGTCCTATTATTGTGTCCGAGGAGTTGTTTCTTGATACGTTTATAAAACGTTATAAGGAGTCTTCTTATCTATTAAAGATATTTTTCAGGTACTATGCTTGTAGTTGTAGCTTTGCTCTGGCCGTGTGTTTGAAGGCTAATATACCGCACTTCTGA	918	0.3824	MASFMQPLHKAPWLLLCNPFTRVIPKFEFFRSKGASKSDIVKLVTKDPMVMVLSPSLEDHIVPTYKLLYRLLQSDKETIACAIQNPYSISDCRVPYNIALLVENGVKDSTIVRLLHKSSRSLNTNRNYMVKLVKELKDMGFRPSKVSFGTALEAKLSVYKILWNEKVDAFKKWGWSDEDVMEAFRRQPQCMLTSIDKINLSMSFWVDQLGWDVLALAKRPSVFTYSLEKRIIPRTSIVQFLLKKGLRKKTASLTCPIIVSEELFLDTFIKRYKESSYLLKIFFRYYACSCSFALAVCLKANIPHF	305

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre4g00802	305	PANTHER	CGI-12 PROTEIN-RELATED	10	274	IPR003690	GO:0003690\|GO:0006355
	Trre4g00802	305	Pfam	mTERF	8	146	IPR003690	GO:0003690\|GO:0006355
	Trre4g00802	305	Pfam	mTERF	164	264	IPR003690	GO:0003690\|GO:0006355
	Trre4g00802	305	Gene3D	Transcription termination factor 3, mitochondrial	53	278	IPR038538	-
	Trre4g00802	305	SMART	mt_12	181	212	IPR003690	GO:0003690\|GO:0006355
	Trre4g00802	305	SMART	mt_12	213	247	IPR003690	GO:0003690\|GO:0006355
	Trre4g00802	305	SMART	mt_12	5	36	IPR003690	GO:0003690\|GO:0006355
	Trre4g00802	305	SMART	mt_12	41	74	IPR003690	GO:0003690\|GO:0006355
	Trre4g00802	305	SMART	mt_12	112	142	IPR003690	GO:0003690\|GO:0006355
	Trre4g00802	305	FunFam	Mitochondrial transcription termination factor-like	57	276	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre4g00802	Trre-Chr4	5999369	6000881	Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	mTERF	Trre4g00802		mTERF	1.1e-11	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre4g00802	K15032		-	mtr:25488156	332.413