Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00797 ATGGAAGATCTTGAAAGAATGGGTAGAGAACTCAAATGTCCAATCTGTTTGAGTTTAATTCATTCCGCTGCTTCACTCACCTGCAATCATCTTTTCTGCAACTCTTGTATAATTAAGTCTATGAAATCTGCATCTTCTTGTCCGGTTTGTAAAATACCCTTCGCTCGTCGAGAGGTTCGTCCTGCTCCTCAAATTGACAGCTTGGTCACTATCTACAAAAACATGGAAGCTGCTTCTGGAATCAATTTATTTGGAACTCAAAATCCACCTGCTACCAAATCACTAGATGAGGATAAGCAATGTGAAGATGATTCTAAGTCTGGTGAGAAGGGAACTGCTGGGGATCATGAAAATCATCCCGAAGAGGAAAAAACCCCCAAAAGAAAGAAGTTGGCGAAGAAGCTTGAGGCCGGCACAAAAACTTCGGCTTCTAACCGTGCAAAGCCTTCTTTTCCGGCTAAGAAAAGGGTTCAGGTGCCACAAGATATTCTTTCAGAAACTCCAATGAGGAATTTGAAGACAGGAGGCACTGTTAGTCTAATTAACAAAGAGGGAACACGAAATGCTTCAACCAAGGGAAATGAAATGGAAATTCAAAGTGAAAAAGGTGATCAGGTGAAAGAACCATTCTTTTGGTTAAGAGAGGAGAAGGATGGTGAAATGTTAAGTCAACACAGCGATGAGGATCTAATTATTGAGGGTTCTACACCAGTTCCTCCTTCATTCAGTGATCTCAAAGATGCTGATGATGAAAGCCCTTCAAAACAAGCTCCATCAGACGAGGTGCAAAATAAACCATCTTTTGATTTATTTGATAGTGAGATGTTTGAATGGACGCAAAAGCCATGCTCACCTGAATTATTTTCAAGTCCCATTAAAATGCAGGTTGAGGATACTTTTGAGAACGACGAAAATATAGAAGAATTAATGGCAGGGACTCAAGAGCATCAGTTAAGTGCTGATGCTTACATTATAAACTTTGAGAATCCCATAGGCAATCAATTGGCTGATGTGTTGCCACAAGGTGTGTCCTCTCAAATTAGATGTTTTGATGATCTAAATGGGAAAAAGAAGAGTACAAAGAGAAGCAGGATGGCTAGAGGAAAATCTAAGGAAGACAAGATTAGGGAACAAAAATGTCAAAATGATGAAATGAATTTGGATTCAAATATAAAATCAAAAGATATTGAGGATCAATCATTGGACAACAAGCACAGAGCTTCTAATCTGAAAAACTCTAATAAAAAGGGCAAGAAGGTTTCTTTCATTACTAGTACAGATTCAACACCACAAACTGCTTGTACAGTCTCCAATATATCAGGAGTTCGAAGCAATGGTAGAAGAATGACAGCTAAGAATTCATATACTTCTGCATCTAAACAAGATAATGAGATAAAATGTTCTCAGAAGATTGCTGGAAAAAGTCAGGTGAGAAGATCTGGAAAACAAAGGATGGATGTTGTGCATGAACCACCTGAAGATTTAACTTCAGTGCAAAATCAATGCGAAGAGCTTGCTGGATCTGCTTCATCTAATAGAAAGGATGCTAATACTGGGAAAAGAAAAAGCAGTCTGTCCAGAAATTCTATGCCTTGCAGTAAAGAAAGGAAGAGTACTAAAAAGCCAAAAATTTCTCCTGAATTTATCTCTAGGACTAAAAATGATGAAGAAATTAAGTCGAAGGAAAGTATTAAGCAAGGTACTGATGTCAGGCCTTTGAATGATTCTTCAAAAGAGAAACAGTGTCATTTGACTGATCAACCAGTTTTAAGGAAATGTGTGAACGACGTCAAAGACTATCAATGTGCTTTCTGTCTCTCATCAGAAGAATCAGAGGCTTCTGGACCGATGGTGCACTATTTTGATGGCAAGCTTGTAACTGCTGATTATGAAGGAGGATCTAAAGTCATACATTGTCACAGGAATTGCACTGAATGGGCCCCAAATGTATATTTTGAAGATGATAATGCAATAAACCTTGAAGCTGAAATAAGTAGAAGTCGGAGAATCAAATGTAGTTTCTGTGGACTTAAAGGAGCTGCACTCGGTTGCTTTGAGAAAAGTTGTCGAAGGAGCTTTCATGTTCCCTGTGCCAAGTGGACTCCTGAATGTCGATGGGATATGGAAAATTTTGTCATGTTATGCCCTCTGCATGCATCCTCCGTGTTGCCGTATGAAAGTTCAGGATCCCAACACAGGAGCAAGATACTCATAGCTAGTAAAGTTAAAAGCTGTAGCCGCAAACATGACACTACAAGCCAGAGTTGTGTTACTCATGGCTCTCACAAAAAAATTGTGCTGTGTTGTTCAGCTCTATCTGTAGAGGAGAGGGATGTTGTTTCTGAATTTGAAAGAGTGTCCAAGGTTACAGTTTTGAAAACTTGGGATTCAAGTGTTACCCATGTAATAGCATCAACAAATGAAAATGGGGCATGCAGAAGGACTCTCAAAGTATTGTTGGGTATTCTAGAAGGAAAGTGGATTCTCAGCATTGAGTGGATCAAAGCTTGCATGAAAGAAACAGGACCTGTTGACGAGGAGCGTTATGAAGTTAATGTTGACATCCATGGAATTAGGGATGGTCCCCGTCTTGGACGACAAAGAGCATTGAACAAGCAACCAAAGCTTTTTGATGGCTACAAGTTCTATTTCATGGGAGATTTTATCCCGTCATACAAGGGTTATCTGCAAGACCTTGTGATTGCAGCTGGCGGGACAATTCTGCATAGAAAACCAGTGTCAGGTGACCATCAAGCAATTCCACCTGATATGCGTCCACACCAAACCCTCATAATCTACAGTCTCGAGCTTCCTGCTCAATGCAATCCTTTGGAAAAGGATACAATTTTTAGCCAAAGGCGATGTGATGCAGAGGTTTTGGCAAGGCCTACTGGTTCAAAGGTTGCAAGTAACACATGGATTCTGAATTCAATTGCTGGCTGTAAGCTGCAAAGCCTTGCTCAATAA 2967 0.3991 MEDLERMGRELKCPICLSLIHSAASLTCNHLFCNSCIIKSMKSASSCPVCKIPFARREVRPAPQIDSLVTIYKNMEAASGINLFGTQNPPATKSLDEDKQCEDDSKSGEKGTAGDHENHPEEEKTPKRKKLAKKLEAGTKTSASNRAKPSFPAKKRVQVPQDILSETPMRNLKTGGTVSLINKEGTRNASTKGNEMEIQSEKGDQVKEPFFWLREEKDGEMLSQHSDEDLIIEGSTPVPPSFSDLKDADDESPSKQAPSDEVQNKPSFDLFDSEMFEWTQKPCSPELFSSPIKMQVEDTFENDENIEELMAGTQEHQLSADAYIINFENPIGNQLADVLPQGVSSQIRCFDDLNGKKKSTKRSRMARGKSKEDKIREQKCQNDEMNLDSNIKSKDIEDQSLDNKHRASNLKNSNKKGKKVSFITSTDSTPQTACTVSNISGVRSNGRRMTAKNSYTSASKQDNEIKCSQKIAGKSQVRRSGKQRMDVVHEPPEDLTSVQNQCEELAGSASSNRKDANTGKRKSSLSRNSMPCSKERKSTKKPKISPEFISRTKNDEEIKSKESIKQGTDVRPLNDSSKEKQCHLTDQPVLRKCVNDVKDYQCAFCLSSEESEASGPMVHYFDGKLVTADYEGGSKVIHCHRNCTEWAPNVYFEDDNAINLEAEISRSRRIKCSFCGLKGAALGCFEKSCRRSFHVPCAKWTPECRWDMENFVMLCPLHASSVLPYESSGSQHRSKILIASKVKSCSRKHDTTSQSCVTHGSHKKIVLCCSALSVEERDVVSEFERVSKVTVLKTWDSSVTHVIASTNENGACRRTLKVLLGILEGKWILSIEWIKACMKETGPVDEERYEVNVDIHGIRDGPRLGRQRALNKQPKLFDGYKFYFMGDFIPSYKGYLQDLVIAAGGTILHRKPVSGDHQAIPPDMRPHQTLIIYSLELPAQCNPLEKDTIFSQRRCDAEVLARPTGSKVASNTWILNSIAGCKLQSLAQ 988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00797 988 MobiDBLite consensus disorder prediction 366 409 - -
Trre4g00797 988 Pfam PHD-like zinc-binding domain 640 718 - -
Trre4g00797 988 Pfam BRCA1 C Terminus (BRCT) domain 790 838 IPR001357 -
Trre4g00797 988 SMART BRCT_7 758 841 IPR001357 -
Trre4g00797 988 SMART BRCT_7 874 981 IPR001357 -
Trre4g00797 988 MobiDBLite consensus disorder prediction 354 581 - -
Trre4g00797 988 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 596 721 IPR013083 -
Trre4g00797 988 MobiDBLite consensus disorder prediction 414 476 - -
Trre4g00797 988 FunFam Breast cancer associated RING 1 1 83 - -
Trre4g00797 988 MobiDBLite consensus disorder prediction 187 266 - -
Trre4g00797 988 MobiDBLite consensus disorder prediction 95 136 - -
Trre4g00797 988 SMART PHD_3 671 719 IPR001965 -
Trre4g00797 988 MobiDBLite consensus disorder prediction 197 227 - -
Trre4g00797 988 SMART ring_2 13 50 IPR001841 -
Trre4g00797 988 SMART ring_2 672 718 IPR001841 -
Trre4g00797 988 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 81 IPR013083 -
Trre4g00797 988 FunFam Breast cancer type 1 susceptibility protein homolog 762 868 - -
Trre4g00797 988 ProSiteProfiles Zinc finger RING-type profile. 13 51 IPR001841 -
Trre4g00797 988 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 3 985 IPR031099 GO:0006281|GO:0006974
Trre4g00797 988 ProSiteProfiles BRCT domain profile. 790 851 IPR001357 -
Trre4g00797 988 MobiDBLite consensus disorder prediction 494 514 - -
Trre4g00797 988 CDD BRCT_Bard1_rpt1 765 840 - -
Trre4g00797 988 ProSiteProfiles Extended PHD (ePHD) domain profile. 599 719 IPR034732 -
Trre4g00797 988 ProSiteProfiles BRCT domain profile. 872 988 IPR001357 -
Trre4g00797 988 SUPERFAMILY BRCT domain 876 986 IPR036420 -
Trre4g00797 988 FunFam Breast cancer associated RING 1 596 721 - -
Trre4g00797 988 SUPERFAMILY BRCT domain 765 865 IPR036420 -
Trre4g00797 988 SUPERFAMILY RING/U-box 4 73 - -
Trre4g00797 988 Pfam Zinc finger, C3HC4 type (RING finger) 12 50 - -
Trre4g00797 988 ProSitePatterns Zinc finger RING-type signature. 28 37 IPR017907 -
Trre4g00797 988 Gene3D BRCT domain 873 980 IPR036420 -
Trre4g00797 988 Gene3D BRCT domain 761 868 IPR036420 -
Trre4g00797 988 MobiDBLite consensus disorder prediction 533 581 - -
Trre4g00797 988 MobiDBLite consensus disorder prediction 83 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00797 Trre-Chr4 5976856 5982294 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00797 6 63 RAD5 or RAD16-like Gene Family AT5G22750 35.000 4.75e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00797 K10683 - gmx:100804958 1288.86