Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00779 ATGAGACTCTCTTCAGCTGGTTTTAGTCCTCCACCCCAAGAAGGGGAAAAGCGAGTCCTAGATTCAGAACTTTGGCATGCATGTGCTGGCCCTCTTGTCTCTTTGCCAGCAGTAGGAAGTAGAGTTGTGTACTTTCCACAAGGTCACAGTGAACAAGTGGCTGTGTCAACTAACAAGGAAGTGGATGCTCATATCCCAAACTATCCAAGCTTACCTCCTCAGCTTGTGTGTCAACTTCATAATTTGACTATGCACGCTGACGTGGAGACCGATGAAGTGTACGCGCAGATGACCTTGCAACCTCTGAATGCTCAAGAGCAAAAAGAGGCTTACCTTCCAGCAGAGTTGGGCACTCCGAGTAAACAGCCAACAAACTACTTCTGCAAGACTTTGACTGCTAGTGACACAAGCACTCATGGAGGATTCTCCGTGCCTCGCCGCGCAGCTGAGAAAGTGTTTCCTCCATTGGACTTCTCTCAACAGCCTCCTGCTCAAGAGTTAATAGCAAGAGATTTGCATGGTAACGAATGGAAATTCAGACATATCTTCCGAGGTCAACCTAAAAGGCATCTACTTACAACTGGGTGGAGTGTTTTTGTGAGTGCTAAAAGACTTGTTGCTGGTGATTCTGTGCTGTTTATCTGGAACGAAAAGAACCAATTGCTTCTTGGCATCCGCCGTGCTAGCCGACCACAAACTGTGATGCCTTCATCGGTGTTGTCAAGTGATAGTATGCACTTGGGACTTCTTGCTGCAGCAGCTCATGCGGCTCAAACCAATAGTCGTTTCACTATTTTCTATAACCCACGTGCTTGCCCATCAGAATTTGTCATACCCTTAGCGAAGTATGTTAAAGCTGTGTATCATACTCGAGTTTCAGTTGGTATGCGTTTCAGGATGCTTTTTGAAACCGAGGAGTCTAGTGTGCGACGATACATGGGTACAATAACCGGCATTTGTGACCTAGATTCTGTCCGGTGGCCGAACTCGCATTGGCGCTCTGTGAAGGTTGGGTGGGATGAATCCACTGCAGGAGAGAGGCAACCTAGAGTGTCTTTGTGGGAAATTGAGCCATTAACAACATTTCCTATGTATCCATCACCATTCCCCCTTAGGCTTAAAAGACCGTGGCCTCCTGGATTGCCTTCGTTCAATGGCATGAAAGATGATGATTTTGGCATGAATTCTCCTTTAATGTGGCTCCGAGACACCGATAGAGGGCTTCCGTCTCTTAATTTTCAAGGGATTGGTCTTAATCCTTGGATGCAACCAAGGTTTGATCCCTCCATGCTGAATATGCAAACAGATATGTATCAAGCTGTGGCTGCTGCTGCACTTCAGGACATGAGGAGTGTTGATCCTTCCAAATCCCATTCTGGTTCCTTACTTCAATTTCAGCAACCGCAGAACTTTCCGAACCGGACCGCTGCTTTAATGCAGGCACAGATGTTGCAACAGTCGCAATCTCAACAGGCTTTTCAAAATAATAATCCGGACAATCAAAATCTGTCGCAATCTCAGCTACAAACTCAGAGTCATCCTCAGCAGCATCTACAGCATCAGCACTCGTTCAATAATCAACTCCATAATCATAATCAGCAGCAACAACAAACTCAACAGCAAGTGGTAGATAATCAGCAGAACTCTGGTTCGATCTCTACAATGTCTCAGTTTGTTTCAGCGCCACAACCTCAATCACCACCACCTATGCAAGCTCTCTCTTCACTATGCCATCAGCAGAGTTTTTCTGATTCAAATGTGAACTCTTCAACTACTATTGTTTCTCCTTTGCACAGTATCATGGGTTCGTTTCCGCAGGATGAAACATCACAACTTATGAGCCTTCCTAGAACAAGTTCTTGGGTTCCTGTTCAAAATTCAACCGGCTGGCCCTCCAAGCGTGTTGCGGTGGATCCACTCCTTTCTTCGGGAGCATCTCAATGTATGCTGCCTCAGGTGGAACAGTTAGGGAATCCACAGAATACCGTATCTCAGAATGCTATTACATTGCCACCGTTTCCTGGTAGGGAGTGCACAATTGACCAAGCAGGGAGCAATGATCAGCAAAGTAATCTTTTATTTGGTGTCAATATTGATCCCACGTCTCTTCTAATGCATAACGGGATGTCAAACTTCAAGGGTATTGGTGGCGGCAACAGCGACTCCTCAACCATGCCCTATCATCAATCTTCTAATTACATGAACACCACAGGCACCAATTCTTCGTTGAATCATGGAGTAACACCTAGTATTGGTGAATCCGGTTTCTTGCATACCCCAGAAAACGGGGAGCAAGGAAACAACCCACTGAACAAGACCTTTGTGAAGGTTTATAAATCAGGGTCCTTCGGAAGATCGTTGGATATCACTAAGTTCAGCAGCTACAATGAGCTGCGTAGTGAGCTCGCCCGAATGTTCGGACTTGAAGGCGAGTTGGAGGACCCTGTAAGATCAGGCTGGCAGCTTGTATTCGTTGACCGAGAGAATGATGTTCTTCTCCTCGGTGATGGCCCTTGGCCGGAATTCGTGAATAGTGTATGGTGCATCAAGATACTTTCGCCCGAGGAAGTGCAGCAAATGGGCAACACTGGCCTCGGGCTTTTGAACTCGGTTCCAATTCAAAGGCTCTCAAATAGCATCTGTGATGACTATGTGAGCCGTCAAGATTCAAGAAATCTAAGCAGCGGAATAACAACCGTGGGATCTCTAGACTACTGA 2718 0.4625 MRLSSAGFSPPPQEGEKRVLDSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAVSTNKEVDAHIPNYPSLPPQLVCQLHNLTMHADVETDEVYAQMTLQPLNAQEQKEAYLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRASRPQTVMPSSVLSSDSMHLGLLAAAAHAAQTNSRFTIFYNPRACPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGICDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFNGMKDDDFGMNSPLMWLRDTDRGLPSLNFQGIGLNPWMQPRFDPSMLNMQTDMYQAVAAAALQDMRSVDPSKSHSGSLLQFQQPQNFPNRTAALMQAQMLQQSQSQQAFQNNNPDNQNLSQSQLQTQSHPQQHLQHQHSFNNQLHNHNQQQQQTQQQVVDNQQNSGSISTMSQFVSAPQPQSPPPMQALSSLCHQQSFSDSNVNSSTTIVSPLHSIMGSFPQDETSQLMSLPRTSSWVPVQNSTGWPSKRVAVDPLLSSGASQCMLPQVEQLGNPQNTVSQNAITLPPFPGRECTIDQAGSNDQQSNLLFGVNIDPTSLLMHNGMSNFKGIGGGNSDSSTMPYHQSSNYMNTTGTNSSLNHGVTPSIGESGFLHTPENGEQGNNPLNKTFVKVYKSGSFGRSLDITKFSSYNELRSELARMFGLEGELEDPVRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPEEVQQMGNTGLGLLNSVPIQRLSNSICDDYVSRQDSRNLSSGITTVGSLDY 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00779 905 FunFam Auxin response factor 291 363 - -
Trre4g00779 905 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Trre4g00779 905 SMART B3_2 127 229 IPR003340 GO:0003677
Trre4g00779 905 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Trre4g00779 905 FunFam Auxin response factor 125 229 - -
Trre4g00779 905 Gene3D - 291 363 - -
Trre4g00779 905 FunFam Auxin response factor 767 861 - -
Trre4g00779 905 SUPERFAMILY CAD & PB1 domains 769 847 - -
Trre4g00779 905 Gene3D - 125 228 IPR015300 -
Trre4g00779 905 ProSiteProfiles PB1 domain profile. 772 856 IPR000270 GO:0005515
Trre4g00779 905 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Trre4g00779 905 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 861 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trre4g00779 905 MobiDBLite consensus disorder prediction 481 522 - -
Trre4g00779 905 MobiDBLite consensus disorder prediction 529 548 - -
Trre4g00779 905 Pfam AUX/IAA family 762 857 IPR033389 -
Trre4g00779 905 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Trre4g00779 905 CDD B3_DNA 126 227 IPR003340 GO:0003677
Trre4g00779 905 Gene3D - 769 861 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00779 Trre-Chr4 5783669 5788607 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00779 1 483 B3 DNA Binding Superfamily AT1G30330 86.475 0.0 857
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Trre4g00779 AUX_IAA 2.7e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00779 - - gmx:100798719 1481.08