Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00768 ATGCTTTGGCTAACTGGTGGACCTGGTTGCTCTGCTTTGTCTAGCCTTCTCTTTGAAATTGGTCCACTTGAATTTAAAAAGGAGGAATACAATGGGAGCTTGCCTAATCTGATCTTGAGGCCACAATCATGGACAAAGGTAAGTAGCATTATATTTGTAGACTTGCCAGTTTTCACAGGCTTCACTTATGCCACAACAGACTCTGCTGCTCAACGAAGCGACTCGATACAAGTTAAACAAGCTCATCAATTTCTCAGGAAGTGGTTGGTTGATCATCCAAAATTTCAATCAAATGAAGTTTATATTAGCGGTGATTCATACTCCGGCGTTATTGTTCCAATAATTGTTCAAGAAATTGCACAAGCCAATGATAAAGGGGTCCAACCATGGATAAATCTCCAGGGATACTTGCTGGGGAATCCTCTAACAACTGATAAGGATGAAAACTACGCAATCCCTTTTGCGCACGGAATGGGACTCATATCCGATGAACTATACGAATCGCTGCAAAAAAATTGTAATGGCGACTATATAAATGTAGACCCCGAAAATGTTTTATGTTCCAGAGATATCAGCTCTTACAATGAGGCTACATCAGAAATTAACGAAAGCCATATTTTAGATCCGCTATGTGAGTGGCTTTATCCTGAAGTTTCTCTAAGGAGATCTCGAATTCAGAAATATCACTCCAAAGTGCCTCCCTTGAGTTGTCGAAATTATCCATATTTACTTAGCAATTATTGGGCCAATGATGATAATGTTCGCAAAGCACTGCACATACGCAAGGGAAGTATTGGGAAATGGGAACAATGTTCCGCCAATGACAGAACTTATACATACGATATCCGTTACAGCTATGATTATCATGTAAATCTCAGTAAAAAAGGCATTCGTTCGCTAATTTACAGTGGCGATCATGACTTTCAAGTTCCATTCTTGGGGACACAAGCATGGATAAGATCTTTAAATTATTCCATTGTTGATGATTGGAGACCATGGCACACAAATGAGCAAGTTGCAGGATACACAAGAACTTATTCTAATGGGATGACATTTGCAACTGTCAAGGGTGGAGGATACACGGCTCCGGAGTTTCGGCCTGAAGAATGTTTTGACATGTTTAGTAGGTGGATATCTAAGAGGCCTTTGTAG 1152 0.4019 MLWLTGGPGCSALSSLLFEIGPLEFKKEEYNGSLPNLILRPQSWTKVSSIIFVDLPVFTGFTYATTDSAAQRSDSIQVKQAHQFLRKWLVDHPKFQSNEVYISGDSYSGVIVPIIVQEIAQANDKGVQPWINLQGYLLGNPLTTDKDENYAIPFAHGMGLISDELYESLQKNCNGDYINVDPENVLCSRDISSYNEATSEINESHILDPLCEWLYPEVSLRRSRIQKYHSKVPPLSCRNYPYLLSNYWANDDNVRKALHIRKGSIGKWEQCSANDRTYTYDIRYSYDYHVNLSKKGIRSLIYSGDHDFQVPFLGTQAWIRSLNYSIVDDWRPWHTNEQVAGYTRTYSNGMTFATVKGGGYTAPEFRPEECFDMFSRWISKRPL 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00768 383 PRINTS Carboxypeptidase C serine protease (S10) family signature 53 63 IPR001563 GO:0004185|GO:0006508
Trre4g00768 383 PRINTS Carboxypeptidase C serine protease (S10) family signature 88 113 IPR001563 GO:0004185|GO:0006508
Trre4g00768 383 PRINTS Carboxypeptidase C serine protease (S10) family signature 40 52 IPR001563 GO:0004185|GO:0006508
Trre4g00768 383 PRINTS Carboxypeptidase C serine protease (S10) family signature 350 363 IPR001563 GO:0004185|GO:0006508
Trre4g00768 383 FunFam Carboxypeptidase 286 380 - -
Trre4g00768 383 FunFam Carboxypeptidase 236 382 - -
Trre4g00768 383 SUPERFAMILY alpha/beta-Hydrolases 1 382 IPR029058 -
Trre4g00768 383 Pfam Serine carboxypeptidase 1 379 IPR001563 GO:0004185|GO:0006508
Trre4g00768 383 Gene3D alpha/beta hydrolase 1 382 IPR029058 -
Trre4g00768 383 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 1 367 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00768 Trre-Chr4 5733971 5737299 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00768 244 383 Calmodulin-binding Proteins AT2G22960 64.286 1.16e-58 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00768 K16296 - gmx:100792006 602.438