Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00743 ATGGCTTTTCCAAATCAATCCATGTCTGATTCTCCACAGAGAAAGATAGGAAGAGGAAAGATTGAGATCAAAAGGATCGAAAACACGACGAATCGCCAAGTAACTTTCTGCAAACGTAGAAATGGCTTACTCAAAAAAGCATATGAACTATCTGTTCTTTGTGATGCAGAAGTTGCTCTAATTGTCTTCTCTAGCCGTGGACGCCTCTATGAATATGCTAATAACAGTGTGAAAGCAACTATTGAAAGGTACAAAAAAGCATGTTCAGATTCATCTGGCACTGGATCTGCTTCTGAGGCTAATGCTCAGTTTTATCAGCAAGAAGCAGACAAATTGCGCGTGCAAATCAGTAACCTGCAGAATAACAACAGGCAAATGATGGGTGAATCTTTGGGCTCTATGAATGCCAAGGACCTGAAAAACTTGGAGTCTAAATTAGAAAAAGGAATAAGTAGGATACGTTCCAAAAAGAATGAGCTGTTATTTGCTGAAATTGAATACATGCAGAAAAGGGAGATAGATTTGCACAATAACAACCAACTTCTGAGAGCAAAGATAGCTGAAAGTGAGAGGAACCATCATCATAATATTAATATGAGTGTGTTACCTGGAGGCACAAACTATGAATCTATGCAGTCTCATCAGGCTGAGCAGCAGCAGCAATATGATTCTCGTGGATACTTTCAAGTGACTGGTTTACAACCAAGTAGTCAGTATGGAAGACAAGACCACATGTCCCTTCAATTAGTGTAA 753 0.3931 MAFPNQSMSDSPQRKIGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIERYKKACSDSSGTGSASEANAQFYQQEADKLRVQISNLQNNNRQMMGESLGSMNAKDLKNLESKLEKGISRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAKIAESERNHHHNINMSVLPGGTNYESMQSHQAEQQQQYDSRGYFQVTGLQPSSQYGRQDHMSLQLV 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00743 250 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Trre4g00743 250 MobiDBLite consensus disorder prediction 1 20 - -
Trre4g00743 250 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Trre4g00743 250 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Trre4g00743 250 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Trre4g00743 250 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 72 IPR002100 GO:0003677|GO:0046983
Trre4g00743 250 FunFam agamous-like MADS-box protein AGL11 28 111 - -
Trre4g00743 250 ProSiteProfiles K-box domain profile. 102 192 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre4g00743 250 Pfam K-box region 99 186 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre4g00743 250 ProSitePatterns MADS-box domain signature. 18 72 IPR002100 GO:0003677|GO:0046983
Trre4g00743 250 SUPERFAMILY SRF-like 17 88 IPR036879 GO:0003677|GO:0046983
Trre4g00743 250 Coils Coil 139 159 - -
Trre4g00743 250 Gene3D - 28 94 IPR036879 GO:0003677|GO:0046983
Trre4g00743 250 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Trre4g00743 250 MobiDBLite consensus disorder prediction 204 223 - -
Trre4g00743 250 Coils Coil 102 129 - -
Trre4g00743 250 PANTHER SERUM RESPONSE FACTOR HOMOLOG 18 215 - -
Trre4g00743 250 CDD MADS_MEF2_like 17 91 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00743 Trre-Chr4 5506082 5515851 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00743 14 250 MADS-box Gene Family AT3G58780 68.067 5.52e-110 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Trre4g00743 K-box 5.5e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00743 K09264 - gmx:732595 415.231