Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00742 ATGAGATCGATTTGCAATGGGTGTCGCGTACTTCGCAAAGGTTGTGGTGAAAACTGCATCATCAAACCTTGCCTTGAGTGGATACGTTGCCCTGAAGCTCAAGGCAATGCCACCCTCTTCCTTGCCAAGTTCTATGGCCGAACTGGTTTGCTCAACCTTCTTACTAACGCTACCAATAAAAATTCCATAGCCGTGTTCAAATCATTGTTGTACGAGGCTGCGGGTAGATTGGTGAATCCCACACATGGGGCACTCGGCTTATTTTGGACTGCAGAATGGAGCCGATGTGAAAAAGCAGTTGAAGCCGTGTTGACTGGATCAAATATTAACATTGTTACAGTTGTTGATGGACAAACATCATCATGTACAGCCATTGCTGATAAGCGTGTTCTTCCAACAACAACCAATGGTATACGCCACATAGCAAGAGGTACCAACATTGAGATCAGAGAGAAAACTCAATTCAAGAGAGTTGGGTCAACTTTCAAGCCCAAGCCGCAAGTTGGTTTTGTCGATAAGGCTACATTTTTTAAATCAGTTTTGGAGAATGGCAGCATAAAAACTGCAGAGGCTTCGTCGGTGATTGAGACAGAGCCAAATGAAGCTAGTGAAAATCAAGTGAACTTGGAACTCACTCTTGGCTTCAATTTTCAATCAAACAATAAAAAGTCGGATGATAATTAA 684 0.4284 MRSICNGCRVLRKGCGENCIIKPCLEWIRCPEAQGNATLFLAKFYGRTGLLNLLTNATNKNSIAVFKSLLYEAAGRLVNPTHGALGLFWTAEWSRCEKAVEAVLTGSNINIVTVVDGQTSSCTAIADKRVLPTTTNGIRHIARGTNIEIREKTQFKRVGSTFKPKPQVGFVDKATFFKSVLENGSIKTAEASSVIETEPNEASENQVNLELTLGFNFQSNNKKSDDN 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00742 227 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Trre4g00742 227 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 5 213 - -
Trre4g00742 227 Pfam Lateral organ boundaries (LOB) domain 5 103 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00742 Trre-Chr4 5478624 5479742 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00742 1 216 AS2 family AT3G02550 38.356 1.22e-49 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre4g00742 LOB 6.5e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00742 - - mtr:25485496 299.671