Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00741 ATGGAAGCTAAAAATCCTACAAGATTCAAGCTAGGGAAACAGTCATCGTTAGCACCAGAACGAAATAGGGAAGAAGATGGACTTCAACATGATGGTGATGATGATGTTGCTGCTACTATTGATCCTGGTGTTAGGTTGATGTATTCAGCCAATGAAGGTGATGTTGATGGAATTAGCGAGGTTCTTGAATCAGGTGTGAGTGTTAATTTTAGAGATGTTGATGGACGTACTGCTCTTCATATTGCTGCTTGTCAGGGATTGACTCATGTTGTTGAGTTGTTGCTTGAAAAAGGAGCTGATGTTGATCCTAAAGATCGTTGGGGGAGCACGCCCCTTGCAGATGCTATATTCTATAAAAACAATGATGTCATCAAACTATTGGAGAATCATGGAGCAAAGCCTGTGATGGCCCCTATGCATGTTAATCATGCACGAGAAGTCCCGGAATATGAAATCAATCCTAAAGAACTTGATTTCACTAACAGTGTGGAGATAACGAAGGGGACTTTCTGCAGTGCGCTGTGGCGTGGGACTGAGGTTGCGGTAAAAAAGCTTGGGGAGGATGTGATTAGTGATGAGGAGAAAGTGAATGCTTTCAGAGATGAGCTTGCTCTGTTTCAGAAGATTCGGCATCCAAATGTAGTCCAATTTCTTGGTGCTGTGACACAGAGTAGTCCTATGATGATTGTGACAGAATATCTTCCCAAGGGAGATCTTCGTGACTTCATGAAAAGAAAAGGAGCTTTGAAACCAAGTACAGCTGTGAGATTTGCACTTGATATTGCTAGGGGAGTAGGTTATTTGCATGAAAATAAACCATCACCCATTATTCATCGTGATCTTGAGCCTTCTAATATATTGCGGGATGATTCTGGGCACCTAAAAGTTGCAGACTTTGGGATTAGCAAGTTGCTAGCAGTTAAAGAAGACAAGCCTCTAACTTGCCAAGACACTTCTTGCCGCTACGTGGCTCCTGAGGTTTTTAAACAAGAAGAATACGACACTAAATTGGATGTGTTCTCATTTGCACTAATTCTACAAGAGATGATTGAAGGTTGCCCTCCTTTCTCTGCAAAGCGTGATGATGAGGTTCCTAAAGTATATGCTTCAAAAGAGAGGCCGCCCTTCAACTCTCCTACCAAGCGTTATTCTCATGGAATTCGAGAGTTGATTGAAGAATGCTGGAATGAGAATCCAGCAAAGAGGCCAACATTCAGGCAAATAATAACAAGGCTGGAGTCCATCTACAATACAATTGGTCAAAAAAGACGTTGGAAGGTTAGACCATTGAGGTGTTTTCAGAATCTGGAAGCATTGATAAAGAGAGATCGTTCAAAATTAAGTAGTCGGGGGGGCAGTTCATCTCGCTCAAGTACTAGCCATTTATGA 1389 0.4204 MEAKNPTRFKLGKQSSLAPERNREEDGLQHDGDDDVAATIDPGVRLMYSANEGDVDGISEVLESGVSVNFRDVDGRTALHIAACQGLTHVVELLLEKGADVDPKDRWGSTPLADAIFYKNNDVIKLLENHGAKPVMAPMHVNHAREVPEYEINPKELDFTNSVEITKGTFCSALWRGTEVAVKKLGEDVISDEEKVNAFRDELALFQKIRHPNVVQFLGAVTQSSPMMIVTEYLPKGDLRDFMKRKGALKPSTAVRFALDIARGVGYLHENKPSPIIHRDLEPSNILRDDSGHLKVADFGISKLLAVKEDKPLTCQDTSCRYVAPEVFKQEEYDTKLDVFSFALILQEMIEGCPPFSAKRDDEVPKVYASKERPPFNSPTKRYSHGIRELIEECWNENPAKRPTFRQIITRLESIYNTIGQKRRWKVRPLRCFQNLEALIKRDRSKLSSRGGSSSRSSTSHL 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00741 462 SUPERFAMILY Ankyrin repeat 45 135 IPR036770 -
Trre4g00741 462 Gene3D Transferase(Phosphotransferase) domain 1 235 453 - -
Trre4g00741 462 PRINTS Tyrosine kinase catalytic domain signature 383 405 IPR001245 GO:0004672|GO:0006468
Trre4g00741 462 PRINTS Tyrosine kinase catalytic domain signature 231 244 IPR001245 GO:0004672|GO:0006468
Trre4g00741 462 PRINTS Tyrosine kinase catalytic domain signature 270 288 IPR001245 GO:0004672|GO:0006468
Trre4g00741 462 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 142 421 - -
Trre4g00741 462 FunFam serine/threonine-protein kinase STY46-like 152 235 - -
Trre4g00741 462 ProSiteProfiles Ankyrin repeat region circular profile. 74 106 - -
Trre4g00741 462 Gene3D Phosphorylase Kinase; domain 1 151 234 - -
Trre4g00741 462 ProSiteProfiles Protein kinase domain profile. 159 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g00741 462 ProSiteProfiles Ankyrin repeat profile. 74 106 IPR002110 GO:0005515
Trre4g00741 462 Pfam Ankyrin repeats (3 copies) 46 134 IPR002110 GO:0005515
Trre4g00741 462 SMART ANK_2a 74 103 IPR002110 GO:0005515
Trre4g00741 462 SMART ANK_2a 107 136 IPR002110 GO:0005515
Trre4g00741 462 FunFam Integrin-linked protein kinase family 24 150 - -
Trre4g00741 462 FunFam Os01g0748600 protein 145 432 - -
Trre4g00741 462 MobiDBLite consensus disorder prediction 17 35 - -
Trre4g00741 462 Pfam Protein tyrosine and serine/threonine kinase 175 412 IPR001245 GO:0004672|GO:0006468
Trre4g00741 462 Gene3D - 8 150 IPR036770 -
Trre4g00741 462 SUPERFAMILY Protein kinase-like (PK-like) 162 413 IPR011009 -
Trre4g00741 462 CDD STKc_MAP3K-like 165 412 - -
Trre4g00741 462 PIRSF ILK 1 435 - -
Trre4g00741 462 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00741 Trre-Chr4 5466644 5472944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00741 8 433 MAP Kinase Kinase Kinase AT4G18950 69.014 0.0 624
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Trre4g00741 PK_Tyr_Ser-Thr 3.9e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00741 - - gmx:100790126 801.201