Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00729 ATGGTTGATAATTCAGAAAGCAATGAAATTCATCAAGAGGTGGTTTTAGATGTAAATGGTGATACCTCAAAAAATTGTGATGAAGAGTCAGACATCAAAGACTCTGTGCCCCTTTTGAAGAAGTTGGTAGCGGAAGTGGTGGGAACATACTTGATGATATTTGCTGGTTGTGCTGCTGTTGATGTGAACTTAAACAATGATCATGTAGTGACACTTCCTGGAATTGCATTTACTTGGGGATTTACAGTTATGGTATTGATTTATTCACTTGGTCACATTTCTGGTGCTCATTTCAACCCAGCTGTTACCATTGCTCATGCTTCCACTAAAATATTTCCCCTCAAACAGGTACCAGCTTATATTATAGCTCAGATTCTTGGATCCACATTAGCAAGTGGAACCCTCAGACTTATATTTAATGGTGAAGATGATCATTTTATTGGAACACTTCCAGCTGGTTCTAACCTGCAAGCTTTTGTGATTGAGTTCATATGCACTTTCTTCCTTATGTTTGTTATTACTGGAGTGGCCACAGATAACAGGGCGATTGGTGAATTAGCAGGGCTTGCAGTTGGGTCTACAATAATAGTAGATATATTGTTTGCGGGACCAATGACAGGAGCATCAATGAATCCTGCAAGGAGTTTAGGACCTGCTATTTTGTACCATGAATATACAGGATTGTGGATATATTTGATTTCACCAACTTTAGGAGCTTTGGTAGCAACATGGACTTACAATTTCATCAGACACACGAACAAGCCAACAAGCGATGAGCTCACCAAGATTGAGCTCACCAAGATTGTCCCCTCCTTCCTCAGGAGCAGGTCTTAA 834 0.4005 MVDNSESNEIHQEVVLDVNGDTSKNCDEESDIKDSVPLLKKLVAEVVGTYLMIFAGCAAVDVNLNNDHVVTLPGIAFTWGFTVMVLIYSLGHISGAHFNPAVTIAHASTKIFPLKQVPAYIIAQILGSTLASGTLRLIFNGEDDHFIGTLPAGSNLQAFVIEFICTFFLMFVITGVATDNRAIGELAGLAVGSTIIVDILFAGPMTGASMNPARSLGPAILYHEYTGLWIYLISPTLGALVATWTYNFIRHTNKPTSDELTKIELTKIVPSFLRSRS 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00729 277 PANTHER AQUAPORIN NIP2-1 25 257 IPR034294 -
Trre4g00729 277 NCBIfam MIP family channel protein 44 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre4g00729 277 SUPERFAMILY Aquaporin-like 36 256 IPR023271 -
Trre4g00729 277 ProSitePatterns MIP family signature. 97 105 IPR022357 -
Trre4g00729 277 Gene3D Glycerol uptake facilitator protein. 2 261 IPR023271 -
Trre4g00729 277 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre4g00729 277 PRINTS Major intrinsic protein family signature 192 214 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre4g00729 277 PRINTS Major intrinsic protein family signature 229 249 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre4g00729 277 PRINTS Major intrinsic protein family signature 116 135 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre4g00729 277 PRINTS Major intrinsic protein family signature 161 179 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre4g00729 277 PRINTS Major intrinsic protein family signature 79 103 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre4g00729 277 CDD MIP 40 249 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre4g00729 277 Pfam Major intrinsic protein 35 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00729 Trre-Chr4 5367524 5369409 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00729 4 277 Major Intrinsic Protein MIP AT5G37810 51.613 9.91e-91 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00729 K09874 - gmx:100812577 397.127