Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00728 ATGGCTGATCATTCATCAAGCAATGGCAACAACCATGACATAGTTTTGAATGTCAATGATGCCTCAAAAATTTGTGACGACTCCTCAGGATTTAAAGATTGTGTCCCTCTTTTGCAGAAGTTGGTAGCCGAGGTGGTGGGGACATACTTCTTGATATTTGCAGGATGTGCTGCTGTTGTGGTGAATCTTGACAATGACAAAGTGGTAACACTTCCTGGAATTGCAATTGTTTGGGGACTTGCTGTAATGGTATTGGTTTATTCTGTTGGTCACATTTCTGGTGCTCATTTCAATCCTGCTGTTACCATTGCTCATGCTTCAACCAGAAGGTTCCCCATTAAGCAGGTACCAGGGTATATAATAGCACAACTTCTTGGATCTACACTTGCAAGTGGAACACTTAGACTTATATTCAATGGCAAGGAAAATCATTTTACAGGAACACTCCCAGCTGGTTCTGATCTCCAAGCATTTGTAGTTGAATTCATAATCACTTTTTATCTTATGTTTGTCATTTCTGGAGTTGCCACCGATAATAGAGCGATTGGTGAATTGGCTGGACTTGCAGTTGGAGCTACGGTACTTCTAAATGTGATGTTTTCCGGGCCAATTACCGGAGCATCAATGAATCCTGCAAGAAGTTTAGGACCTGCTATTGTTCATAAAGAGTATAGAGGAATATGGATATATTTAGTGTCACCAACTCTTGGTGCGGTGGCCGGTACATGGGCGTATACTTTCATCCGATACACAAACAAGCCGGTTCGTGAAATTAGTAAGAGTGCCTCTTTCATTAAAGCAGTTGAAAATGGGCGGAGCTAA 822 0.4161 MADHSSSNGNNHDIVLNVNDASKICDDSSGFKDCVPLLQKLVAEVVGTYFLIFAGCAAVVVNLDNDKVVTLPGIAIVWGLAVMVLVYSVGHISGAHFNPAVTIAHASTRRFPIKQVPGYIIAQLLGSTLASGTLRLIFNGKENHFTGTLPAGSDLQAFVVEFIITFYLMFVISGVATDNRAIGELAGLAVGATVLLNVMFSGPITGASMNPARSLGPAIVHKEYRGIWIYLVSPTLGAVAGTWAYTFIRYTNKPVREISKSASFIKAVENGRS 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00728 273 PANTHER AQUAPORIN NIP2-1 21 264 IPR034294 -
Trre4g00728 273 CDD MIP 39 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre4g00728 273 ProSitePatterns MIP family signature. 96 104 IPR022357 -
Trre4g00728 273 NCBIfam MIP family channel protein 43 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre4g00728 273 PRINTS Major intrinsic protein family signature 228 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre4g00728 273 PRINTS Major intrinsic protein family signature 160 178 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre4g00728 273 PRINTS Major intrinsic protein family signature 191 213 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre4g00728 273 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre4g00728 273 PRINTS Major intrinsic protein family signature 115 134 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre4g00728 273 PRINTS Major intrinsic protein family signature 78 102 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre4g00728 273 SUPERFAMILY Aquaporin-like 36 258 IPR023271 -
Trre4g00728 273 Pfam Major intrinsic protein 36 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre4g00728 273 Gene3D Glycerol uptake facilitator protein. 8 261 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00728 Trre-Chr4 5358096 5360448 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00728 25 270 Major Intrinsic Protein MIP AT5G37820 59.843 4.87e-103 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00728 K09874 - gmx:100786924 447.588