Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00722 ATGATGGAGCAAAGTAATGGAAGTTCAAGTTCCAATCCATCATTGCCTCCTTTTCTCTCTAAGACTTATGAAATGGTTGACGAACCTTCTACTGATGCAATTATTTCATGGAGTGACACCAATAGAAGTTTCATTGTTTGGAATCCACCAGTTTTTACAAGTGATTTGTTACCTAAGTTCTTTAAGCATAAGAACTTTTCAAGCTTCATCAGACAGCTTAATACTTATGGCTTTCGAAAAGTTGATACAGAACTATGGGAATATGCAAATGATGATTTTGTAAGAGATCAACCTCATCTTATGAAGAATATCCATAGGAGCAAACCAGTTCATAGCCATTCTTTGCAGAATTCCCGTGGCCAAGGGGCTGCTGCTGCTCCACTAACAGAATCCGAACGGCGAAATTTGAATGCGGAGATTCAAAGACTTCAAGATGACAATGAAGAACTACTTCTGGAGTTGCAGACACAGGACGATGAGTGGAAAGCGAAACAGATACAGTTACATCACGCGAAGGATCGTTTGGAAAAGTTGGAAAAGAGGCAACAAACCATACTCTCTTTTGTTGGTCATGTGCTGCAGAAACCTAGGGTTGAGTCAGGTCTCTGGCCACTGACAGAAAACTCAAAGAGAAAACGAAAGTTTCCGAGAAATATTCCCTTCATTAATGACGCTAGCATTGAAGATAATATGGAAACTTCTTGTGTGTTACCTAGTGAAAATGCTGAGAGTGAATCTATTCTCTCGTTAAGCAAGGGACGATTGGATGTGCTCGAATCATCGTTGACGTTTTGGGAGAATATTGTGCATGATGTTAGTGAAACTTCTTTTAATAGTCACTCAAACTTAGATTTTGATGACTCTATGAGCTGTGCAAATAGTCCTAAAATATCTTGTATGCAACTAGATTTTGAAGTTCAGCACAAGTCACCGGGAATCGACACATACTCTAAGCCAGCTGCTGTCATTGTTCCTCATCCTGTTGCGCTGAATGAACAACCTGTCGTAACAGCCCCGGTGACTACTGGTCATACTCATAATGACGATTTTTGGGAACAACTCTTGACGGAAAATCCTCCTTCCGCTTCAGATGATGAGGCAGAACAAAGTAGATTGCATAATGATGGTTGGCCTGGTGGACTTAGCAGATAA 1152 0.4054 MMEQSNGSSSSNPSLPPFLSKTYEMVDEPSTDAIISWSDTNRSFIVWNPPVFTSDLLPKFFKHKNFSSFIRQLNTYGFRKVDTELWEYANDDFVRDQPHLMKNIHRSKPVHSHSLQNSRGQGAAAAPLTESERRNLNAEIQRLQDDNEELLLELQTQDDEWKAKQIQLHHAKDRLEKLEKRQQTILSFVGHVLQKPRVESGLWPLTENSKRKRKFPRNIPFINDASIEDNMETSCVLPSENAESESILSLSKGRLDVLESSLTFWENIVHDVSETSFNSHSNLDFDDSMSCANSPKISCMQLDFEVQHKSPGIDTYSKPAAVIVPHPVALNEQPVVTAPVTTGHTHNDDFWEQLLTENPPSASDDEAEQSRLHNDGWPGGLSR 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00722 383 MobiDBLite consensus disorder prediction 109 130 - -
Trre4g00722 383 SUPERFAMILY "Winged helix" DNA-binding domain 14 106 IPR036390 -
Trre4g00722 383 Coils Coil 126 181 - -
Trre4g00722 383 SMART hsfneu3 14 107 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre4g00722 383 Gene3D - 10 108 IPR036388 -
Trre4g00722 383 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 7 230 IPR027725 -
Trre4g00722 383 MobiDBLite consensus disorder prediction 355 383 - -
Trre4g00722 383 ProSitePatterns HSF-type DNA-binding domain signature. 57 81 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre4g00722 383 FunFam Heat shock transcription factor 1 11 108 - -
Trre4g00722 383 Pfam HSF-type DNA-binding 18 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre4g00722 383 MobiDBLite consensus disorder prediction 110 124 - -
Trre4g00722 383 PRINTS Heat shock factor (HSF) domain signature 69 81 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre4g00722 383 PRINTS Heat shock factor (HSF) domain signature 56 68 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre4g00722 383 PRINTS Heat shock factor (HSF) domain signature 18 41 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00722 Trre-Chr4 5301021 5302886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00722 1 371 HSF AT4G18880 47.120 5.75e-97 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Trre4g00722 HSF_DNA-bind 3.7e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00722 K09419 - gmx:100820566 442.58