Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00720 ATGGCTTCAGGAGCTATTTTCTCGTCGCTGCGGCGGCGAAGATCACCGACTTTAGAAGCTTTTCTTGCTCCGGTTGACTTAAGCGATGTTGCTTTGGTTCAGACTCTTGTAACGGTGGTGAACGAGCTTGTGTCTTGTTTTTCAAAGCGTTCTTTTTTCTTTCAGAGGAAAAACACGCGTTCTTTGGTTAGAAAAGTTGAAGTTTTTCAAGTTCTTTTGGAGTATTTGAACGATTCGGGTTCGTGTTCAGGTTCTGGTTTTCCACCTACAGCTTTGCTTTGTCTGAAAGAGCTTTATTTGTTGCTGTATAGGTCAAAGATTCTTCTTGATTACTGCGCACAATCGAGTAAGTTATGGCTTTTGCTTCAGAATCATTCGATTTCGGGTCATTTTCATGATTTGAATCAAGAGATTTCGACTCTTTTGGATGTTTTTCCTGTTAAGGATGTTCGTTTGAGTAAGGATGTTAGGGAACAGGTTGAGCTTTTGTTGAAGCAATCAAGGAGAGCTAAGCTATTTATAGATATGGAAGATGAAGCTCTAAGGATTCGTTTCTTTTCGTTTCTTGATGAGTTTGAGAATGGGAGGATTCCTGATTCGGCCGAATTGCGTTCTTTTTATGTTGATAAGTTGCAGGTTATTGATGCTGCTAGTTGTAGAACTGAAATTGAGGCTTTGGAGGAGCAGATTGTTAACCATGAGGGTGATATTGAGCCTACGATTTCGGTGCTTAAAGGGTTTGTAGCTATGACTCGGTATTGTAGGTTTTTGATTTTCGGATTTGAGGAAGATGAGCTTGATTTGGAAAATGGAAGTCAGAAGAAGAATCCTAAGAAGGGTTTGATTACTCAAGAAATTGCTGATACATTTTTAACTGTTCCAAAGGACTTTTGTTGTCCGATATCGTTGGATTTGATGAGAGATCCGGTGATTATTTCCACCGGTCAAACTTATGATAGGAGTTCCATTTCTAGGTGGATGGATGAAGGGCATACAACTTGTCCGAAAACAGGTCAAACGCTTGCTCACACTCGTCTTGTCCCAAATCGTGCCTTGAGGAATTTGATTGTCCAGTGGTGCAGTGCTCATGGAATCCCCCTTGATCCAGTAGAAGTTATGGATGCAATGGGTGAAGCTTTTGCATCTGCTTGTCCCACCAAAGCTGCCCTCGAAGCCAATAGAGCCACTGCAAATCTTCTCATTCAACAGCTAGCTAATGGATCACAATCTGGAAAGACTATTGCTGCTCGGGAGATTCGATTGCTTGCAAAAACCGGCAGAGAAAATCGTGCCTTCCTTGCAGAAGCGGGGGCGATTCCTTATCTTCGGAACTTATTGGCGTCGCCTAATTCCGTTGCTCAGGAGAATTCAGTCACTGCTTTGCTCAACTTATCCATTTATGACAAGAACAAAAGCCGGATCATGGATGAGACAGGTTGTCTCGGATCAATTGTTGCTGTGTTGAGATTCGGGCATACAACAGAAGCAAGGGAAAATGCTGCTGCAACATTGTTCAGCCTATCAGCCGTCCATGACTATAAGAAGATAATCGCAGATGAGACCGGAGCTGTTGAAGCCTTAGCAGGGCTTTTGCAAGATGGGACATCAAGAGGAAAGAAAGATGCTGTAACAGCTCTGTTCAATCTTTCCACACACACCGAGAATTGTGTTAGAATGATCGAGGCAGGAGCAGTATCAGCTCTAGTTGAGGCTTTGGGGAACGAAGGAGTTGCCGAGGAAGCAGCAGGTGCACTAGCCTTGATCGTCCGGCAGCCTTTTGGAGCCAAAGCAGTAGTCAATCAAGACGAGGCAGTAGCAGGATTAATAGGAATGATGCGCTGTGGAACACCACGAGGCAAAGAGAACGCAGTCGCAGCATTGCTGGAGTTATGCCGTAGTGGAGGTTCAGCCGCAACAGAAAGGGTGGTTAAGGCACCAGCTTTGGCCGGATTACTTCAAACCCTACTATTTACCGGGACAAAGAGAGCAAGACGAAAAGCCGCGTCACTTGCTAGAGTATTTCAAAGATGTGAAAATGCATCTTTACATTATGGTGGATTAGGTGTAGGTTATGCATATGCTAGCAATTCAGCTCAAACTAGGGATACAAACTTTGTTGCGGGTGATGTTTCAGTACCTATGTCCATCTCTGTACCTGTATTATAG 2166 0.4377 MASGAIFSSLRRRRSPTLEAFLAPVDLSDVALVQTLVTVVNELVSCFSKRSFFFQRKNTRSLVRKVEVFQVLLEYLNDSGSCSGSGFPPTALLCLKELYLLLYRSKILLDYCAQSSKLWLLLQNHSISGHFHDLNQEISTLLDVFPVKDVRLSKDVREQVELLLKQSRRAKLFIDMEDEALRIRFFSFLDEFENGRIPDSAELRSFYVDKLQVIDAASCRTEIEALEEQIVNHEGDIEPTISVLKGFVAMTRYCRFLIFGFEEDELDLENGSQKKNPKKGLITQEIADTFLTVPKDFCCPISLDLMRDPVIISTGQTYDRSSISRWMDEGHTTCPKTGQTLAHTRLVPNRALRNLIVQWCSAHGIPLDPVEVMDAMGEAFASACPTKAALEANRATANLLIQQLANGSQSGKTIAAREIRLLAKTGRENRAFLAEAGAIPYLRNLLASPNSVAQENSVTALLNLSIYDKNKSRIMDETGCLGSIVAVLRFGHTTEARENAAATLFSLSAVHDYKKIIADETGAVEALAGLLQDGTSRGKKDAVTALFNLSTHTENCVRMIEAGAVSALVEALGNEGVAEEAAGALALIVRQPFGAKAVVNQDEAVAGLIGMMRCGTPRGKENAVAALLELCRSGGSAATERVVKAPALAGLLQTLLFTGTKRARRKAASLARVFQRCENASLHYGGLGVGYAYASNSAQTRDTNFVAGDVSVPMSISVPVL 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00720 721 SMART Ubox_2 296 359 IPR003613 GO:0004842|GO:0016567
Trre4g00720 721 FunFam RING-type E3 ubiquitin transferase 369 690 - -
Trre4g00720 721 ProSiteProfiles U-box domain profile. 292 366 IPR003613 GO:0004842|GO:0016567
Trre4g00720 721 Pfam U-box domain 293 363 IPR003613 GO:0004842|GO:0016567
Trre4g00720 721 Gene3D - 522 676 IPR011989 -
Trre4g00720 721 Gene3D - 396 521 IPR011989 -
Trre4g00720 721 Pfam Armadillo/beta-catenin-like repeat 427 465 IPR000225 GO:0005515
Trre4g00720 721 SUPERFAMILY ARM repeat 397 674 IPR016024 -
Trre4g00720 721 SUPERFAMILY RING/U-box 281 366 - -
Trre4g00720 721 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 522 564 IPR000225 GO:0005515
Trre4g00720 721 SMART arm_5 552 590 IPR000225 GO:0005515
Trre4g00720 721 SMART arm_5 511 551 IPR000225 GO:0005515
Trre4g00720 721 SMART arm_5 426 466 IPR000225 GO:0005515
Trre4g00720 721 SMART arm_5 591 632 IPR000225 GO:0005515
Trre4g00720 721 FunFam RING-type E3 ubiquitin transferase 292 367 - -
Trre4g00720 721 Coils Coil 216 236 - -
Trre4g00720 721 CDD RING-Ubox_PUB 294 346 IPR045210 -
Trre4g00720 721 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 292 366 IPR013083 -
Trre4g00720 721 PANTHER U BOX DOMAIN-CONTAINING 56 677 - -
Trre4g00720 721 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 437 479 IPR000225 GO:0005515
Trre4g00720 721 Gene3D - 27 148 IPR036537 GO:0007166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00720 Trre-Chr4 5279742 5281907 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00720 1 721 U-box Gene Family AT1G29340 69.252 0.0 940
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00720 - - gmx:100811153 1204.5