Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00716 ATGACTAGGGCTATTCGGAATAGGGTACTCAAAGATGCAAATGGTGATATTAGTGACCATCTACGCAACCACATCCATTTAACAAATTGTATTCACTTGAAGAATCATATGCACAAAAACAGTCCAATACTTGCTGATAGGTCTATTATGAGAGACCTTGTTGTGCTGCAAAGATCTCGTTCCCTTCGGGATCCTTCTGCAAGTCCTCCATCGTGGCACTCTCCTTCTGTAGTTGACTTGCTTTTCAAAAGATCTGAAAATGATGCTGCGATTCAAGGGGGTAGAAGGTCTGTTGGTAATGACAGTAAGAAGGAAGGTAGGAGATTGTCTGGAATTGGAAACTCCCCACCATTGATGAGTAAAGGTTCATCGAGAGTTGCTCCCGGTGAGGCTAGTAGGGGTTTTGATGTGGTACCCGCGGCAACTAGTGAGCGAAGTAGCAGAAGCGGAATGGGGGATGGGAGGAGAGTTGGGAGAGAAGAATCTGGTAGGAAGAGTAATAGGCCTGACTATTTGGAAGTTATTAGTCAAGAGCAACTTCTTCATGAGACTGGCAAAAGTTTGGCCGAAGATGTTGTTTCGAGGCATTCTCATTCGATAGATAGAAAGAATAGACAGAGGGGGAAGAATGTTCGAGATGTGCCAGTTAAGACTCTTTCTGAACAGCTGAAAGATGTTCCTTTGGATAGTGATGATTTAGCATCATCTAACATTCATTTTCGGGCAAGATTTCCAAGACAGGAGAAAATTATTGAGGAGGCACAACATGCTAGCATGCGCGGTCATGGTAATGGATTGAATAGGGTAAAAAGGCGTAAATTTCGAAGTGTAAGAAGAGCTCGGGTTGCTACAACGTCAAGAGATATTGGAGCTGAGAATGAATTGTCAGTGGCTTCCAACTCATTAGCTCAGGGTTCGGCTCACGAGAAATATCACTCGGAGGAGGTTGATGAGTTTGCAGATGGTAATGTTACTAGAGCCCCAAAAAACGGGTGTGGCATGCCTTGGAATTGGTCCAGAATTCATCATAGGGGTAAAACATTCCTTGACATTGCTGGAAGAAGTTTATCTTGTGGTTTATCTGACTCAAGGTTAAAGAAAGGGACATCATTAACTTCCAATGGAAGAAATGTTTCTGCGATGCCTTTGGCAGCTGACTGTTCTAGCTCATGTACTAACTCTGAGGCAGAGGCACTGCCTTTACTAGTTGATGCATCTGGATCTCATGGAAGCTCCGATAATGCTTGCTGGGGCCGTGATTATGCGGGCGAACTAGGTATTTATGGTGATAATTTGTTCAAGCAAGATATTGATTCAGATCTTGCTTCGGAAGCTAGATCCGGTGGCCAACATAACTTGAGACGGAATCATCATAGTAGACACCAAAGTTTAACACAAAAATATATGCCACGAACCTTCAGAGATATGGTTGGACAGAATTTAGTGGCGCAAGCTCTTTCGAATGCAGTGACAAGACGGAAAGTTGGATTGCTGTATGTGTTTTATGGTCCCCATGGCACCGGAAAAACTTCCTGTGCTCGCATATTTGCCAGAGCTTTGAATTGTAGTTCGTCGGAACACCCAAAACCTTGTGGCTTTTGCAATTATTGCATAGCACATGATATGGGAAAGAGTAGAAGTATAAGGGAAGTTGGTCCAGTCAGTAATTTTGACTTTGAGAACATAATGGATCTACTCGATAATATGATTATTTCCCAGCTTCCGTCACAGTACAGAGTGTTTATTTTTGACGATTGTGATACTCTGTCATTAGATTGTTGGAATGCTATCTCCAAGGTCATTGATCGAGCACCTAGACGTGTGGTTTTTATCCTTGTCAGTACTAGTCTTGATGTATTGCCTCATATAATAATATCCAGGTGTCAAAAATTCTTTTTCCCAAAGTTAAAGGATTCAGATATCGTATATACACTGGAGCGGATTGCAACCAAAGAAGGGCTAGATATTGATAAGGATGCCCTGAAACTCATTGCATCAAGGTCCGACGGATCATTGAGAGACGCTGAGATGACAATTGAACAACTTAGTTTGCTTGGGCAGAGAATTTCAGTTCCTCTTGTTCAAGAGCTGGTAGGGCTTATCTCTGACGAGAAGTTAGTGGATCTACTTGACTTGGCATTATCTGCGGACACGGTAAATACTGTGAAGAATTTGAGAGTGATAATGGAAGCAGGTGTTGAACCATTAGCTTTGATGTCACAGCTTGCTACAGTAATTACTGATATACTTGCTGGGACCTATGATTTCACTAAAGAAAGACGTAGAAGGAAATTCTTCCGAAGACAACCATTGTTCAAAGAAGACATGGAAAAGCTTCGCCAAGCTCTGAAAACTTTATCTGAGGCGGAGAAGCAGTTAAGGATGTCCAATGACAAGCTAACATGGTTAACAGCTGCGTTGCTTCAACTTGCTCCTGACCAGCAATATGGGTTGCCTACTTCATCTGATAACAGTTTCAACCATAGTCCTTTTGCTCTAAATAACGGAAATGTAAAAGAAGCTACTAGAAATACCGGTAATCCTGTTGAAATTTCTAACAGAACAAGGAGAATGTCAATGGATGCTCGAATGGAAAATTCTCATGCTGGAAGTTCAGCAGATAGAAGGCATAGTGTGTCTTGTTTTGCTCCTCAACATACTTGTTCACATTCCACCGATAAGACTAGGATAAATGAAAAGCAGATTTTGGATAGAAACCGCAAAGAAATTGAAGAGATATGGTTAGAGGTGCTAGAGAGGATTCACTATCCTGGTCTCAAAGAGTTTTTGTATAAAGCAGGAAAACTAATCTTCATTAGTTTCGGGCCAGCTCCAACTGTGCAGCTAATGTTTAACTCTCAACTTTCCAAATCTACTGCTGAGAAGTTCACTGCTCACATCTTACAAGCATTTGAATCAGTCCTTGGATCTTCTGTAACCATAGAAATAAGATGCGAGTCAAATAAAGATGGAGGCTCTCCTGTTCAACTGCCTCTTGTATTGCCTTCTGTCAATGATGGTTCATCTCAGATCAGAGACTTAAATGACGTTGGCACTGAAAAGAGAAGGGGTGAAATTGTAGAAGAAGAAGAGGAAGCTTCTCATATAGAGCATAAGCATAATGAGCAGCAGGTTGATGCTCACACAACATATAGAAGTCTAGAAGGTACAAGTACGGGACAAGTGTCAGCTTCCCAAAAAATACCGATTGTTAAGTCACATTCAGACCGAAGAAAGCTTAGTGAGAAAAATCAAAGTCGAAGTCTTGTAAAAAGTAAGGTATCTCTTGCTCATGTAATTCAGCAGGCAGAAGGTCAACGAAGTGGGTGGTCAAAACGCAAAGCAGTTTCTATTGCTGAAAAGCTTGAACAAGAGAATCTGAGACTGGAGCCAAGATCAAGGAGCTTACTATGCTGGAAAACATCTAAAGCGACACGTCGGAAGCTGTCGCATTTGAAAATCCGAAACCGAAAAACACGCGCATTGCTGAACCTTGTCTCGTGTGGGAAATGTCTCTCCACAAAATCTCCGAGGTAG 3537 0.419 MTRAIRNRVLKDANGDISDHLRNHIHLTNCIHLKNHMHKNSPILADRSIMRDLVVLQRSRSLRDPSASPPSWHSPSVVDLLFKRSENDAAIQGGRRSVGNDSKKEGRRLSGIGNSPPLMSKGSSRVAPGEASRGFDVVPAATSERSSRSGMGDGRRVGREESGRKSNRPDYLEVISQEQLLHETGKSLAEDVVSRHSHSIDRKNRQRGKNVRDVPVKTLSEQLKDVPLDSDDLASSNIHFRARFPRQEKIIEEAQHASMRGHGNGLNRVKRRKFRSVRRARVATTSRDIGAENELSVASNSLAQGSAHEKYHSEEVDEFADGNVTRAPKNGCGMPWNWSRIHHRGKTFLDIAGRSLSCGLSDSRLKKGTSLTSNGRNVSAMPLAADCSSSCTNSEAEALPLLVDASGSHGSSDNACWGRDYAGELGIYGDNLFKQDIDSDLASEARSGGQHNLRRNHHSRHQSLTQKYMPRTFRDMVGQNLVAQALSNAVTRRKVGLLYVFYGPHGTGKTSCARIFARALNCSSSEHPKPCGFCNYCIAHDMGKSRSIREVGPVSNFDFENIMDLLDNMIISQLPSQYRVFIFDDCDTLSLDCWNAISKVIDRAPRRVVFILVSTSLDVLPHIIISRCQKFFFPKLKDSDIVYTLERIATKEGLDIDKDALKLIASRSDGSLRDAEMTIEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMEAGVEPLALMSQLATVITDILAGTYDFTKERRRRKFFRRQPLFKEDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYGLPTSSDNSFNHSPFALNNGNVKEATRNTGNPVEISNRTRRMSMDARMENSHAGSSADRRHSVSCFAPQHTCSHSTDKTRINEKQILDRNRKEIEEIWLEVLERIHYPGLKEFLYKAGKLIFISFGPAPTVQLMFNSQLSKSTAEKFTAHILQAFESVLGSSVTIEIRCESNKDGGSPVQLPLVLPSVNDGSSQIRDLNDVGTEKRRGEIVEEEEEASHIEHKHNEQQVDAHTTYRSLEGTSTGQVSASQKIPIVKSHSDRRKLSEKNQSRSLVKSKVSLAHVIQQAEGQRSGWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKTSKATRRKLSHLKIRNRKTRALLNLVSCGKCLSTKSPR 1178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00716 1178 SMART AAA_5 495 636 IPR003593 GO:0016887
Trre4g00716 1178 Coils Coil 772 799 - -
Trre4g00716 1178 FunFam DNA polymerase III subunit gamma/tau 458 635 - -
Trre4g00716 1178 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 499 683 IPR027417 -
Trre4g00716 1178 Gene3D - 637 699 - -
Trre4g00716 1178 Gene3D - 453 633 IPR027417 -
Trre4g00716 1178 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 465 873 - -
Trre4g00716 1178 MobiDBLite consensus disorder prediction 149 168 - -
Trre4g00716 1178 NCBIfam DNA polymerase III subunit gamma/tau 462 810 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Trre4g00716 1178 Pfam DNA polymerase III, delta subunit 479 636 - -
Trre4g00716 1178 FunFam DNA polymerase III subunit gamma/tau 637 699 - -
Trre4g00716 1178 CDD HLD_clamp_pol_III_gamma_tau 636 699 IPR045085 -
Trre4g00716 1178 SUPERFAMILY post-AAA+ oligomerization domain-like 707 810 IPR008921 GO:0003677|GO:0006260
Trre4g00716 1178 MobiDBLite consensus disorder prediction 89 170 - -
Trre4g00716 1178 MobiDBLite consensus disorder prediction 444 464 - -
Trre4g00716 1178 Pfam DNA polymerase III subunits gamma and tau domain III 692 750 IPR022754 GO:0003887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00716 Trre-Chr4 5229267 5234387 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00716 462 760 Core DNA Replication Machinery Family AT1G21690 23.588 1.13e-12 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00716 - - gmx:100809005 1841.62