Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre4g00712 | ATGGAAAGATCATCACTCTCTTCATCAGCTAAAAGGCGTGGTATAAAGAAAAGAGTAGTCGAAATTCCAATGAAGGATGTGGAAGGGACTAATACTCCACCGTCCGATTCATGGGCATGGAGAAAGTATGGTCAGAAACCTATCAAAGGTTCCCCTTATCCGAGAGGATACTATAGATGTAGCAGTTCAAAGAGTTGCCCGGCTAGAAAACAAGTAGAAAGGAACCATGTGGACCCCACAGTGCTTCTTGTAACGTACAGCTCCGATCACAACCACGCCGTGCCGGCACCTAGAAACTACCGCAACACAAGCAACGCCGCCGCATCAAACAAAGACTCCGAGTCAGAACACGAACCAGAAACAGAACCGGAGGAAAGGTTTACCGATCTTGGTGAGGAGCCGTTGATCTCCCCTACGGATGAGTTAGGCGGATGGTTGGGAGAAGTGGATACGATCACGTCACCGGCGGGTCTGGAATGTCCGGTTTTCTCAGAGCAGGAAGTTTCGATGTTGGGAGAAGAGGAGATGTCGTTGTTCGCGGATCTAGGAGAGTTGCCGGAGTGTTCGCCGGTGTTTTGGAGAGGGAGGAGGAGTAGCGGCGGCACCGGAGATGTTAGTGTGGGACCACTTGTTGAGGCAAATTGCTCATTGTGA | 654 | 0.5046 | MERSSLSSSAKRRGIKKRVVEIPMKDVEGTNTPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKSCPARKQVERNHVDPTVLLVTYSSDHNHAVPAPRNYRNTSNAAASNKDSESEHEPETEPEERFTDLGEEPLISPTDELGGWLGEVDTITSPAGLECPVFSEQEVSMLGEEEMSLFADLGELPECSPVFWRGRRSSGGTGDVSVGPLVEANCSL | 217 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre4g00712 | 217 | SMART | WRKY_cls | 34 | 94 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Trre4g00712 | 217 | FunFam | WRKY transcription factor 65 | 17 | 95 | - | - | |
Trre4g00712 | 217 | ProSiteProfiles | WRKY domain profile. | 35 | 95 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Trre4g00712 | 217 | MobiDBLite | consensus disorder prediction | 111 | 131 | - | - | |
Trre4g00712 | 217 | MobiDBLite | consensus disorder prediction | 1 | 54 | - | - | |
Trre4g00712 | 217 | Pfam | WRKY DNA -binding domain | 36 | 92 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Trre4g00712 | 217 | MobiDBLite | consensus disorder prediction | 88 | 146 | - | - | |
Trre4g00712 | 217 | Gene3D | WRKY domain | 22 | 96 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Trre4g00712 | 217 | PANTHER | WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED | 10 | 190 | IPR044810 | GO:0003700 | |
Trre4g00712 | 217 | SUPERFAMILY | WRKY DNA-binding domain | 31 | 95 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Trre4g00712 | 217 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre4g00712 | Trre-Chr4 | 5164519 | 5165607 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre4g00712 | 4 | 202 | WRKY Transcription Factor Family | AT1G29280 | 48.636 | 2.51e-57 | 180 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | WRKY | Trre4g00712 | WRKY | 2.6e-24 | CL0274 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre4g00712 | - | - | psat:127080568 | 372.859 |