Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00709 ATGGTAACACCAGTAAATGATAACGGAATCCGTAGCAGAAAGAAGTCATCAAGAGGTCACCATAGGTTTGTAGGAGTTCGTCAAAGGCCGTCCGGAAGATGGGTGGCAGAGATCAAAGACTCATTACAGAAAGTAAGGCTTTGGCTTGGAACATTCGACACAGCTGAAGAAGCCGCTCGTGCTTATGACACTGCTGCTAGAGCTTTGAGAGGTGCTAATGCTAGAACCAACTTTGATTTGCCAGAATCGGGAACCAATGGTGGTGGTGGCACTAAGCGCGGTTCTGGTTCCAACTTCATGCTAGAGAATACCGAGCCTTTTTCTTTCGAAGATGTCAGTGACTCGGGTTCAGGTTCAGAACATGGCCTTCTTGGTGCACTTAAGGCAAAACTTTTAGATGGAAAAGACGGGAAATTTTCATTTTCATTTCCTTCTGTTAGCACGGTTTCAAAATCAACTCAGAATTGTTCGCAAAAGAAAGAATCATCGGCAACTTATTGCCTCTCTCAGATGAATGAAACTCATGTGCTTAATACCATGCCTAGTTCATTGAGTACTTCATCAAACACTTTTGCTAAGAGTATTGTTATTCCAAATCATGATCATGAAATTTGTCAAACACCATCTTTGACAAACATGTTATGGTCCAATGAAATGGAATTTGAATTACCACCTTGGCCTAATCAGAGTCATGTTCATGATGACAATAGTACTAATCTTTTTGCATCTGCAAATGCATCAAATTTTTCATGGCCACTAATAGAGTCCAATATTAACATGACATGTATAGATCAAGGGCTATTAAATAGTAACAGGAATGATCAAATAAATATGATGAGTATGCAGTTACCTCAAGTTGGTGGAACAAGTGAAGGATTTTGGACATTGGATCAGCAGCAACAATTTGTGCAATGTGAGGAGAATAATAGTTGGTTTGGTTCTGCTGGATCTTGGGATCCTCTTATCTATGTGCCCTCTGAGTTAGCTTGA 990 0.403 MVTPVNDNGIRSRKKSSRGHHRFVGVRQRPSGRWVAEIKDSLQKVRLWLGTFDTAEEAARAYDTAARALRGANARTNFDLPESGTNGGGGTKRGSGSNFMLENTEPFSFEDVSDSGSGSEHGLLGALKAKLLDGKDGKFSFSFPSVSTVSKSTQNCSQKKESSATYCLSQMNETHVLNTMPSSLSTSSNTFAKSIVIPNHDHEICQTPSLTNMLWSNEMEFELPPWPNQSHVHDDNSTNLFASANASNFSWPLIESNINMTCIDQGLLNSNRNDQINMMSMQLPQVGGTSEGFWTLDQQQQFVQCEENNSWFGSAGSWDPLIYVPSELA 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00709 329 MobiDBLite consensus disorder prediction 76 100 - -
Trre4g00709 329 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Trre4g00709 329 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Trre4g00709 329 SUPERFAMILY DNA-binding domain 23 79 IPR016177 GO:0003677
Trre4g00709 329 MobiDBLite consensus disorder prediction 78 100 - -
Trre4g00709 329 FunFam ethylene-responsive transcription factor RAP2-11 21 80 - -
Trre4g00709 329 MobiDBLite consensus disorder prediction 1 25 - -
Trre4g00709 329 CDD AP2 22 79 IPR001471 GO:0003700|GO:0006355
Trre4g00709 329 Gene3D AP2/ERF domain 21 80 IPR036955 GO:0003700|GO:0006355
Trre4g00709 329 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Trre4g00709 329 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Trre4g00709 329 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 18 221 - -
Trre4g00709 329 Pfam AP2 domain 22 71 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00709 Trre-Chr4 5144825 5146232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00709 11 78 AP2-EREBP Transcription Factor Family AT5G19790 69.118 1.63e-27 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Trre4g00709 AP2 9.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00709 - - psat:127080595 484.567