Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00693 ATGTCTTCACTTGAAGAAATTCATTTATCAAATAATTCCTTATCAGGAGAAATTCCAAAAGGAATTGGTGATCTTACACAACTGAGCATTTTGAACCTTCAAAATAATCTTCTCATTGGCAACATATCATCAACAATATTAATGTTCAACAACTCATCATTGCAAAAGTTGGCACTTGGTTTTAACAAACTCACTGGCATTCTTCCATCAAATGTTTGTCAAGGACTTCCAAACCTTAGATTACTTTATCTTTATGCTAATGATTTTTCTGGTAAGATGCCAAATATTTGGCGTTTTTGCAAAGAGTTAGAAGATTTGGAACTATCCTTCAATAATTTTGACAAAGGACATATGCCAGCTGACATTGGAAATTTGATCAACCTTCAATCGTTGTATCTTAGAAGCATCAACTTGGAGGGTGAAATTCCACTCTCCCTCTTCAACATCTCTTCTTTAATAGAGATCAACCTTGACGGAAACAATTTAAATGGAACTCTTCCACACGAGATGTGTTTTCAACTTCCTCAACTTCAAATATTTACCTTATACGGTAATCATTTTGAAGGAGCCATTCCACGATCAATTGGCAATTGCACATTATTGCAAACATTAACTTTGCAGGATAATTTTTTTTCAGGTTCAATACCAATGGAGATTGGCAATCTCAATCAACTTCAGCTTCTACAAATGGGAAATAACAGCTTAAGTGGACCTATTCCTTCAAAAGTGTTCAACATTTCAACATTGGTATATTTGCATCTTGAACAAAATTCTTTCTCAGGCATGCTTCCATCAAACATGGGATTTGGCCTTCCTAACCTACAACAAATACACATATATGGAAACAAACTTGTTGGCAAAATTCCAAATAGTATATCCAATGCTTCAAACTTAGTCATAATTGACTTGAGTTTGAATGAATTTAGTGGAAATATACCAAACTCATTTGGAAATTTAAGAGTCCTTGAATCACTAGTCATAGGTGGCAATAATTTGACAATAGATGATTCTCTTGAATTCAACTTCTTAACTTCACTAACAAGTTGCAGAAATTTGAAACATCTTGAAGTATCTAAGATAAGTTTACCATTAAAACTTCCCAAGTCCATTGGAAACTTAACTTTAGAACGCTTTTGGGCAAATTCTTGTGGAATTAATGGAAATATTCCACTAGAAATCGGAAACATGAGCAACCTCATTCAATTATCTCTGAGTCAGAATGATTTACGTGGATCAATTCCAAGTACAATTAAAGGGTTACATAAACTTCAATCTTTGGATCTTAGCTACAATGGACTAAATGGATCTATAGTTCATGAGTTTTGTGAAATTAGGAGTTTGAGTGAGTTGAATTTAACAAACAATAAGCTTTTTGGAGTGTTACCAACATGTTTGGGAAATATGACTTATCTTAGAAAGTTTGACTTAGGATCTAATAGGTTAACCTCTACAATACCTTCCTCATTTTGGACTCTCAAAGATATTTTAGAGGTAAACTTATCCTCCAATGCTATAATTGGAAATCTTCCATCTGATATTAAGAATTTGAGAGCTCTTGTATCATTAGATTTGTCAAGAAATCAAATTTCAAGCAACATTCCATCAACCATAAGTTTCTTGACAACTTTAGAAACTTTGTCCTTAGCATATAACAAAATCAAAGGGCCTATTCCAAAATCACTTGGTGAAATGGTAGGCTTGACTTTCTTGGATTTGTCTCAAAATCTTATAACTGGTGTGATTCCAAAATCTTTAGAGTCACTTTCTTATCTTAAATACATTAATCTTTCATACAATAGATTGCAAGGAGAGATTCCTAATGGAGGACCTTTCAAAAGCTTTACAGCTCAATCTTTTATGCATAATAATGATGCGCTTTGTGGCAATCCTCGCTTACAAGTGCCTCCATGTGATAAACATATTAGGAAAAAATCAAAGACAAAGATGCTACTAATCATAGGCATAACATCTACATTTGTTGTGTTGGGCATTTTGGTTGTTGCATGCATAATTCTTCGGAGGCATAAAAAGAAAAAAGTTGAAAATCCACTTGAAAAGGATTTATCAACTAATTTAGGGCTTTTAAGAAGGCTTTCCTATTCTGAACTTGTGCAAGCAACTAATGGATTCAGTGAAAATGTGGCATCAGCATTGGAGTATCTTCATCATGGTTCATCAACTCCCGTGGTTCATTGTGATTTGAAACCTAGTAATGTGTTACTGGATGAAAATATGGTTGCACATGTCGGTGATTTCGGAATTTCCAAGCTCTTGGATGATGGACATTCTAAAGCTCATACTCAAACTTTAGCTACAATTGGCTATGTTGCACCAGAGTATGGATCTAAGGGAGTTGTTTCTATTAAAGGAGATGTGTATAGCTATGGAATAATGCTAATGGAAATGTTCACAGGAAAGAAGCCGACAAATGAAATGTTTGTAGAAGAATTAACATTGAGAAGTTGGATTAGTGAATCAATGCACAATTCAATTATGGAAGTTGTGGATTGCAATTTAGTCTCACAACATGGAAAAGAAATTCAAGATATATTAGTTCATGTATCATCTATTTTGGCTTTGGCATTGAGATGTTGTGAAGATTCACCCGAGGCACGAGTTAGTATGACACATGTAACTGCTTCATTGATCAAGATAAAGACCTTATTCATCTAA 2673 0.3401 MSSLEEIHLSNNSLSGEIPKGIGDLTQLSILNLQNNLLIGNISSTILMFNNSSLQKLALGFNKLTGILPSNVCQGLPNLRLLYLYANDFSGKMPNIWRFCKELEDLELSFNNFDKGHMPADIGNLINLQSLYLRSINLEGEIPLSLFNISSLIEINLDGNNLNGTLPHEMCFQLPQLQIFTLYGNHFEGAIPRSIGNCTLLQTLTLQDNFFSGSIPMEIGNLNQLQLLQMGNNSLSGPIPSKVFNISTLVYLHLEQNSFSGMLPSNMGFGLPNLQQIHIYGNKLVGKIPNSISNASNLVIIDLSLNEFSGNIPNSFGNLRVLESLVIGGNNLTIDDSLEFNFLTSLTSCRNLKHLEVSKISLPLKLPKSIGNLTLERFWANSCGINGNIPLEIGNMSNLIQLSLSQNDLRGSIPSTIKGLHKLQSLDLSYNGLNGSIVHEFCEIRSLSELNLTNNKLFGVLPTCLGNMTYLRKFDLGSNRLTSTIPSSFWTLKDILEVNLSSNAIIGNLPSDIKNLRALVSLDLSRNQISSNIPSTISFLTTLETLSLAYNKIKGPIPKSLGEMVGLTFLDLSQNLITGVIPKSLESLSYLKYINLSYNRLQGEIPNGGPFKSFTAQSFMHNNDALCGNPRLQVPPCDKHIRKKSKTKMLLIIGITSTFVVLGILVVACIILRRHKKKKVENPLEKDLSTNLGLLRRLSYSELVQATNGFSENVASALEYLHHGSSTPVVHCDLKPSNVLLDENMVAHVGDFGISKLLDDGHSKAHTQTLATIGYVAPEYGSKGVVSIKGDVYSYGIMLMEMFTGKKPTNEMFVEELTLRSWISESMHNSIMEVVDCNLVSQHGKEIQDILVHVSSILALALRCCEDSPEARVSMTHVTASLIKIKTLFI 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00693 890 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 1 205 - -
Trre4g00693 890 Gene3D Ribonuclease Inhibitor 1 114 IPR032675 -
Trre4g00693 890 FunFam Leucine-rich repeat receptor protein kinase EMS1 239 338 - -
Trre4g00693 890 Gene3D Ribonuclease Inhibitor 115 336 IPR032675 -
Trre4g00693 890 Gene3D Ribonuclease Inhibitor 337 646 IPR032675 -
Trre4g00693 890 SMART LRR_sd22_2 540 561 - -
Trre4g00693 890 SMART LRR_sd22_2 222 248 - -
Trre4g00693 890 SMART LRR_sd22_2 420 452 - -
Trre4g00693 890 SMART LRR_sd22_2 25 44 - -
Trre4g00693 890 SMART LRR_sd22_2 516 535 - -
Trre4g00693 890 SMART LRR_sd22_2 564 590 - -
Trre4g00693 890 ProSitePatterns Serine/Threonine protein kinases active-site signature. 729 741 IPR008271 GO:0004672|GO:0006468
Trre4g00693 890 SUPERFAMILY L domain-like 2 167 - -
Trre4g00693 890 Gene3D Transferase(Phosphotransferase) domain 1 696 888 - -
Trre4g00693 890 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 345 641 - -
Trre4g00693 890 SMART serkin_6 659 889 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g00693 890 SMART LRR_typ_2 420 443 IPR003591 -
Trre4g00693 890 SMART LRR_typ_2 564 587 IPR003591 -
Trre4g00693 890 SMART LRR_typ_2 271 295 IPR003591 -
Trre4g00693 890 SMART LRR_typ_2 468 492 IPR003591 -
Trre4g00693 890 SMART LRR_typ_2 174 198 IPR003591 -
Trre4g00693 890 SMART LRR_typ_2 516 540 IPR003591 -
Trre4g00693 890 SMART LRR_typ_2 444 467 IPR003591 -
Trre4g00693 890 SMART LRR_typ_2 1 25 IPR003591 -
Trre4g00693 890 SMART LRR_typ_2 396 419 IPR003591 -
Trre4g00693 890 SMART LRR_typ_2 149 173 IPR003591 -
Trre4g00693 890 SMART LRR_typ_2 76 99 IPR003591 -
Trre4g00693 890 SMART LRR_typ_2 52 75 IPR003591 -
Trre4g00693 890 SMART LRR_typ_2 222 246 IPR003591 -
Trre4g00693 890 SUPERFAMILY L domain-like 374 623 - -
Trre4g00693 890 SUPERFAMILY L domain-like 116 362 - -
Trre4g00693 890 Pfam Protein kinase domain 708 879 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g00693 890 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 691 890 - -
Trre4g00693 890 Pfam Leucine rich repeat 395 433 IPR001611 GO:0005515
Trre4g00693 890 Pfam Leucine rich repeat 518 577 IPR001611 GO:0005515
Trre4g00693 890 Pfam Leucine rich repeat 445 505 IPR001611 GO:0005515
Trre4g00693 890 SUPERFAMILY Protein kinase-like (PK-like) 712 882 IPR011009 -
Trre4g00693 890 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 228 374 - -
Trre4g00693 890 ProSiteProfiles Protein kinase domain profile. 570 890 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00693 Trre-Chr4 5015102 5021616 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00693 713 890 Receptor kinase-like Gene Family AT3G47570 42.935 5.13e-41 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trre4g00693 Pkinase 1.3e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00693 - K13420 mtr:25485995 699.508