Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00692 ATGAGTAGAAAAAACATAACCACGGATGAACTTTCACTTCTTGCATTCAAATCATCCATTACTTTAGACCCTTATCTCATGATTCAAAACTGGTCAACATCCTCTTCTTTATGCACTTGGGTTGGTGTCACATGTGATGAACAACATGTTAGAGTCCATAGTTTGGATCTTAGTAACATGGAACTTGAAGGTACTATTTCCCCACATCTTGGGAATCTCTCTTTCCTTGTTTACCTTGATCTTCAAGGCAACTATTTCACTGGTGAATTGCCACAATCTTTGTTTGGGTTGCATAGATTGAGGTTGCTTGATTTGAGGTATAATGAGTTGGTTGGAGAAATTCCAATAGGAGTTGGAGAATTTTCAAAACTTCAATATTTGAATCTTGGTCATAACAATTTTAGTGGTTTAATTCCACATGTTATTGGTCAACTTCATGTGTTGAGGATTTTGGATATTAGCAATAACAAGCTCTATGGAACCATACCTCAAACGATTTCCACCTTGTCTTCACTTGAAGAAATTTATTTAGCTAATAACTCCTTTTCAGGAGAAATTCCAAAAGAGATGGGTGATCTTACTCAGCTGAGAAAAATGAAGTTTGAACACAATCAACTTTCTGGCAACATACCATCAATAATGTTGAACAACTCACTGTTGCAACATATTTTTCTTGGTTATAATAATCTATCTGGTAATCTTCCATCAAATATTTGCAAAGGGCTTCCAAAACTTACAACACTTGATCTTTCTCATAATGATTTTGTTGGTGACATGCCAACTATTTGGCATCAATGTGAAAATTTGGAAGAATTAGTATTATCTTTCAATCGTTTCAACAAAGGACCAATGCCAAATGAAATAGGAAACTTGAACAAGCTTCAAAATTTATCTCTTACTAGCAACAACTTGGAGGGTGGAATTCCATTCTCCCTTTTCAACATTACTACATTGAAGATTGTTAACCTTGGCGGTAACAATTTAAATGGAACTCTACCAACTGAGTTATGTCGTTCACTTCCTCGACTTGAAAGATTTGTTTTGAGCAATAATCAATTGGAAGGAAACATTCCACGATCAATTGGCAACTGCACATCGCTGACATACTTGTTTTTGAATGATAATCATTTTATTGGTTCAATACCAAAGGAGGTTAGCTATCTTGATCATCTTATGTACCTAGATGTGTCAAACAATAGATTGAGTGGACCTGTTGCTTCAAAACTCTTCAACATTTCAACATTGATCTCATTGTATCTCACAAACAATGCTCTCTCAGGGAATCTTCCCTCAGACTTAGGGTCTGGCTGTCCTAATCTGAGAAGCCTACAAATACGTGGAAACAAGTTTGAGGGAAACATTCCAAATGGTATAGCCAATGCTTCTAAGCTCACTGAAGTAGATTTCCTTGGAAATCAGTTCAGTGGAAAAATACCTGATGTCTTTGGTGGTTTAACATACCTTCAGTGTCTTCATTTAGATTACAATAAGAATTTGAAACTAGATGATTCCTTTGGATTCAACTTCCTTACTTCACTCACAAGTTGTACAAGTTTGAACTATTTGAGTATATCAGGAACTAGATTATCCAAACTTCCCAAGTCCATTGGAAACTTAACTGTAGGATACTTATGGGCATATTCTTGCGGAATTGATGGCAATTTACCACCGGAAATCGGAAACATGAGAAACCTGGTTCAATTATCTATAGGTATGAACAATTTAAACGGACCGATTCCACGTACGATTAAAGAGTTACGCTACCTTCAGTATTTGGATCTTGAATACAATGGACTGCAAGGATCCATTGTTGATGAACTTTGTGAAACTAAGAGTTTGAGTAGTTTGTATCTGTCAAACAATAAGCTTTCTGGAGTGTTACCAACATGCTTAGGAAACATGAGGTCTCTTAGATATTTTCGCGTAGGATCTAATAGATTGACCTCTGAGATACCTTCTTCTTTTTGGAGTCTCAAAGATATCATAGAGTTAAACTTATCCTCCAATGCTTTGATCGGAAATCTTCCGATGGAGATTAGTAAATTGCGAGCAGTTGTACAGTTAGATCTGTCAGGAAATCAGATTTCAGGTAACATTTCTGAAACCATAGGCTTATTAACAACTTTGCAGACTCTCTCCTTAGCACGTAACAAATTGAATGGGACGATTCCCACATCACTCGGTGAAATGGTAAGCTTGAGTTTCTTGGACTTGTCAAATAATCTTCTTACTGGTGAGATTCCAAAATCCTTTGAGAAGCTTGGCTCTCTTAAAAGTATCAACTTTTCATACAATATGTTACAAGGAGAGATTCCTGATGGTGGACAGTTAAAAAATTTAACGGCTCAATCTTTCATGCATAATGAAGCACTCTGCGGTAATCCTCTTCTTCAGGTACCTCCATGTGATAAACATAGAAGGTCTATCGCAAAGACGATATTAATCAAATGCATGCTGCCCATAATTGTTTCAGCCATTTTAGTTGCTGGATGCATTATACTTGTACTACACAAAAGGAAAAAAGTTGAACATCGAACCGAAAGCGATGTATCAACTATAGGAGTTCCAAAAAGGATTTCCTATTATGAACTTGTACAAGCAACTAATGGATTCAGTGCGATTAATTTACTTGGAAAGGGAAGCTTTGGATCTGTGTATCAAGGGATGCTTTCTAGTGGGAAGATGGTTGCAGTTAAAGTAATTGATTTAAGCTTTGAAGCAACATCAAAGAGCTTTGATGTAGAATGCAACGCAATGCGCAATCTACGACATCGAAATCTTGTTGAGATTATTACTAGTTGTTCACATGTTGAGTTCAAATCTTTGGTGATGGAGTTTATGTCAAATGGAAGTGTGGAAAAATGGTTATACTCATATAACTATTGTTTAGATTTCTTGCAAAGGTTGAACATAATGATAGATGTAGCATCTGCATTGGAGTATCTCCATCATGGTTCTTCAATACCTGTGGTTCATTGTGATCTGAAACCTAGTAATGTTTTACTAGACAAAAACATGGTTGCACATGTTAGCGATTTTGGCATCGCCAAGCTCTTAGACGATGGACAGTCTAAAATTCATACCGGGACTTTAGCTACTATTGGCTATGTTGCACCAGAGTACGGTTCTAAGGGTATTGTTTCGATTAAAGGAGATGTATACAGCTATGGGATTATGCTTATGGAGATGTTCACAAGAAAGAGGCCAACAGATGAAATGTTTGCGGCAGAATTAACTTTGAAAACTTGGATAAGTGAATCAATGTCTAATTCAGTTATGGAAGTTGTGGATTCAAATTTAGTCCAACAACATGAAAAAATAATTCATGACATTGTGCCTCATATATCATCTATTTTGGCTTTAAGCTTGAGTTGTTGCGCGGATTCACCTGAAGAGCGAACTAACATGACAGATATCACTGCATCACTAATCAAAATCAGGACCTTATTCCTCCAAGAAAAAGGACATGAAGATGTGAAAATATGTTTATGA 3492 0.364 MSRKNITTDELSLLAFKSSITLDPYLMIQNWSTSSSLCTWVGVTCDEQHVRVHSLDLSNMELEGTISPHLGNLSFLVYLDLQGNYFTGELPQSLFGLHRLRLLDLRYNELVGEIPIGVGEFSKLQYLNLGHNNFSGLIPHVIGQLHVLRILDISNNKLYGTIPQTISTLSSLEEIYLANNSFSGEIPKEMGDLTQLRKMKFEHNQLSGNIPSIMLNNSLLQHIFLGYNNLSGNLPSNICKGLPKLTTLDLSHNDFVGDMPTIWHQCENLEELVLSFNRFNKGPMPNEIGNLNKLQNLSLTSNNLEGGIPFSLFNITTLKIVNLGGNNLNGTLPTELCRSLPRLERFVLSNNQLEGNIPRSIGNCTSLTYLFLNDNHFIGSIPKEVSYLDHLMYLDVSNNRLSGPVASKLFNISTLISLYLTNNALSGNLPSDLGSGCPNLRSLQIRGNKFEGNIPNGIANASKLTEVDFLGNQFSGKIPDVFGGLTYLQCLHLDYNKNLKLDDSFGFNFLTSLTSCTSLNYLSISGTRLSKLPKSIGNLTVGYLWAYSCGIDGNLPPEIGNMRNLVQLSIGMNNLNGPIPRTIKELRYLQYLDLEYNGLQGSIVDELCETKSLSSLYLSNNKLSGVLPTCLGNMRSLRYFRVGSNRLTSEIPSSFWSLKDIIELNLSSNALIGNLPMEISKLRAVVQLDLSGNQISGNISETIGLLTTLQTLSLARNKLNGTIPTSLGEMVSLSFLDLSNNLLTGEIPKSFEKLGSLKSINFSYNMLQGEIPDGGQLKNLTAQSFMHNEALCGNPLLQVPPCDKHRRSIAKTILIKCMLPIIVSAILVAGCIILVLHKRKKVEHRTESDVSTIGVPKRISYYELVQATNGFSAINLLGKGSFGSVYQGMLSSGKMVAVKVIDLSFEATSKSFDVECNAMRNLRHRNLVEIITSCSHVEFKSLVMEFMSNGSVEKWLYSYNYCLDFLQRLNIMIDVASALEYLHHGSSIPVVHCDLKPSNVLLDKNMVAHVSDFGIAKLLDDGQSKIHTGTLATIGYVAPEYGSKGIVSIKGDVYSYGIMLMEMFTRKRPTDEMFAAELTLKTWISESMSNSVMEVVDSNLVQQHEKIIHDIVPHISSILALSLSCCADSPEERTNMTDITASLIKIRTLFLQEKGHEDVKICL 1163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00692 1163 Gene3D Ribonuclease Inhibitor 156 240 IPR032675 -
Trre4g00692 1163 Gene3D Ribonuclease Inhibitor 5 155 IPR032675 -
Trre4g00692 1163 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 512 806 - -
Trre4g00692 1163 SUPERFAMILY Protein kinase-like (PK-like) 849 1143 IPR011009 -
Trre4g00692 1163 SMART LRR_typ_2 730 753 IPR003591 -
Trre4g00692 1163 SMART LRR_typ_2 634 658 IPR003591 -
Trre4g00692 1163 SMART LRR_typ_2 610 633 IPR003591 -
Trre4g00692 1163 SMART LRR_typ_2 682 706 IPR003591 -
Trre4g00692 1163 SMART LRR_typ_2 516 539 IPR003591 -
Trre4g00692 1163 SMART LRR_typ_2 193 217 IPR003591 -
Trre4g00692 1163 SMART LRR_typ_2 340 364 IPR003591 -
Trre4g00692 1163 SMART LRR_typ_2 73 97 IPR003591 -
Trre4g00692 1163 SMART LRR_typ_2 121 144 IPR003591 -
Trre4g00692 1163 SMART LRR_typ_2 145 169 IPR003591 -
Trre4g00692 1163 SMART LRR_typ_2 412 436 IPR003591 -
Trre4g00692 1163 SMART LRR_typ_2 242 265 IPR003591 -
Trre4g00692 1163 SMART LRR_typ_2 754 777 IPR003591 -
Trre4g00692 1163 Gene3D Ribonuclease Inhibitor 500 809 IPR032675 -
Trre4g00692 1163 Gene3D Ribonuclease Inhibitor 241 499 IPR032675 -
Trre4g00692 1163 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 239 434 - -
Trre4g00692 1163 SUPERFAMILY L domain-like 334 514 - -
Trre4g00692 1163 FunFam Leucine-rich repeat receptor protein kinase EMS1 140 237 - -
Trre4g00692 1163 FunFam Leucine-rich repeat receptor protein kinase EMS1 47 139 - -
Trre4g00692 1163 PANTHER OS04G0122200 PROTEIN 388 1150 - -
Trre4g00692 1163 Pfam Protein kinase domain 873 1140 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g00692 1163 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 947 1156 - -
Trre4g00692 1163 SUPERFAMILY L domain-like 517 797 - -
Trre4g00692 1163 ProSiteProfiles Protein kinase domain profile. 871 1151 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g00692 1163 ProSitePatterns Serine/Threonine protein kinases active-site signature. 990 1002 IPR008271 GO:0004672|GO:0006468
Trre4g00692 1163 Gene3D Phosphorylase Kinase; domain 1 833 946 - -
Trre4g00692 1163 Pfam Leucine Rich Repeat 123 142 IPR001611 GO:0005515
Trre4g00692 1163 Gene3D Transferase(Phosphotransferase) domain 1 947 1159 - -
Trre4g00692 1163 Pfam Leucine rich repeat N-terminal domain 8 46 IPR013210 -
Trre4g00692 1163 FunFam Serine-threonine protein kinase plant-type 852 946 - -
Trre4g00692 1163 SMART LRR_sd22_2 291 312 - -
Trre4g00692 1163 SMART LRR_sd22_2 388 414 - -
Trre4g00692 1163 SMART LRR_sd22_2 97 129 - -
Trre4g00692 1163 SMART LRR_sd22_2 682 701 - -
Trre4g00692 1163 SMART LRR_sd22_2 730 756 - -
Trre4g00692 1163 SMART LRR_sd22_2 242 271 - -
Trre4g00692 1163 SMART LRR_sd22_2 145 174 - -
Trre4g00692 1163 ProSitePatterns Protein kinases ATP-binding region signature. 877 899 IPR017441 GO:0005524
Trre4g00692 1163 SUPERFAMILY L domain-like 31 378 - -
Trre4g00692 1163 SMART serkin_6 871 1150 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g00692 1163 Pfam Leucine rich repeat 708 767 IPR001611 GO:0005515
Trre4g00692 1163 Pfam Leucine rich repeat 148 206 IPR001611 GO:0005515
Trre4g00692 1163 Pfam Leucine rich repeat 390 450 IPR001611 GO:0005515
Trre4g00692 1163 Pfam Leucine rich repeat 317 377 IPR001611 GO:0005515
Trre4g00692 1163 Pfam Leucine rich repeat 635 695 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00692 Trre-Chr4 5001577 5006920 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00692 1 1147 Receptor kinase-like Gene Family AT5G46330 33.665 5.30e-179 555
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trre4g00692 Pkinase 3.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00692 - K13420 mtr:25481440 1153.27