Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre4g00691 ATGGCCAAACTATGCTCTCTCTTCTTTTGTCTCTCACTCTCACTAAATTATTACTTCTTCACTTGTTTAGCTATGAGTAACAAAAACATAACCACAGATGAACTTTCACTTCTTGCTTTCAAATCATCCATTACTTTAGACCCTTATCATATGGTTCAAAACTGGTCAACCTCCTCTTCTTTATGCACTTGGGTTGGTGTCACATGTGATGAACAACATGGTAGAGTCCATAGTTTGGATCTTAGTAACATGGAACTTGAAGCTAATAACTCCTTTTCAGGAGAAATTCCAAAAGAGGTGATGACTGATCTTACTCAGCTGAGAACAATTAACTTTGAAAATAATCTGCTTTCTGGCAACATATCGTCAATAATATTCAACAACTCACTGCTGCAATATTTATTCCTTGGTTATAATAATCTATCTGGCAATCTTCCATCAAATATTTGCAAAGGACTTCCAAGACTTAGAACACTTGATCTTTCTCATAATGATTTTGTTGGTGACATGCCAACTACTTGGCATCAATGTGAAAATTTGGAAAGATTAGCATTATCCTCCAATGATTTCAACAAAGGATCAATGCCAGATGAAATGGGAAACTTGAACAAGCTTCAATATTTATATCTTAGTAGCAACAACTTGGAGAGTGAAATTCCATTCTCCCTTTTCGACATTACTACTTTGAAAATTGTTAAACTTGGCGGTAACAATTTAAATGGAACTCTACCAAGTGAGCTATGTCATTCACTTCCTCAACTTGAAATATTTGTTCTAAGCGCCAATCGATTTGAAGGAAGCATTCCACTGTCAATTGGCAACTGCACATCACTGAAATTCTTGGATTTGGACGATAATCATTTTAGTGGTTCAATACCAGAGGAGATTGGCTGTCTTGATAAACTTGAGACCCTACAATTGTCAAACAATAGATTGAGTGGACATGTTGCTTTAAAACTCTTCAACATTTCATCATTGAGGATCTTGTATCTTGGAAACAATTCTCTCTCAGGCATTCTTCCATCAGATATGGGGAATGGCTTTCCTAATTTGGAAAAACTACAAATACATGGGAACATGTTTGTAGGAAACATTCCAAATGGTATAGCCAATGCTTCTAAGCTCACTGAAATAGATTTTATGAATAATGAGTTCAGTGGAATAATACCTAATGTCTTTGGAGGTTTAAAATTCCTAGAAAGTCTCCGTTTAGATCACAATAATAATTTGAAGCTATATGATTCCTTTGGATTCAACCTCCTCACTTCACTTACAGCTTGTAGAAATTTGAAATATTTGTCTGTATCAGAAACTAGTTTATCCAAACTTCCCAAGTCAATTGGAAACTTAACTATAGGATATTTTTGGGCAGATTCTTCTAGAATTGATGGTAATTTTCCATTGGAAATCGGAAACATGAGCAACCTTGTTCGATTATCTTTGAGTACGAATGATTTAAAAGGACCAATCCCTGCTACAATTAAAGGATTACAGAAGCTTCAGTGTTTGGATTTTGACAATAATGGACTGCAAGGATCCATTGTTGATGAGCTTTGTGAAATTAGGAGTTTGAGTGACTTGTATCTGTCAAACAATAAGCTTTCTGGAGTATTACCAACATGCTTGGAAAATATGACTTCTCTTAGAAAGTTACACTTAGGATATAATAGGTTGACCTCTGGAATACCTTTATCTTTTTGGAGCCTTAAAGATATGTTAGAGTTAAATTTATCCTCCAATGCTTTAAAAGGAAATCTTCCCATGGAGATAAGTAAATTGAGAGCAATTGTACTATTAGATCTGTCAGGAAATCAGATTTCAAGCAACATTCCTGAAACCATTGGTTTATTAACAACTTTGCAGACTCTCTCCTTAGCAAATAACAAATTGTATGGGACAATTCCGACATCACTTGGTGAAATGATAATCTTGAGCTTCTTGGACTTGTCGCAAAATCTTCTTACAAGTGCGATTCCAAAATCCTTAGAGTCACTTGCCTTTCTTGAAAGTGTTAACTTTTCATACAATATGTTACAAGGAGAGATTCCTGATGGTGGACATTTCAAAAATTTCACAGCTCAATCTTTCATGCATAATGAAGCACTTTGTGGTAATCCTCTTCTACAAGTACCTCCATGTGATAAACATAGAAGAAATATGATTGCACATATTAGCGATTTTGGCATTGCCAAGCTCTTGGATGATGGGCAGTCTAACATTCATACCGGGACTTTAGCTACTATTGGCTACGTTGCACCAGAGTACGGTTCTAAGGGTATTGTTTCGATTAAAGGAGATGTATACAGCTATGGGATTATGCTTATGGAGATGTTCACAAGAAAGAGGCCAACAGATGAAATGTTTGCAGAAGAATTAACTTTGAAAACTTGGATAAGTGAATCAATGTCTAATTCAGTTATGGAAGTTGTGGATTCAAATTTAGTCCAACAACATGAAAAAACAATTCATGACATTGTGCCTCATATATCATCTATTTTGGCTTTAAGCTTGAGCTGTTGCGCGGATTCACCTGAAGAGCGAACTAACATGACCGATATCACTGCATCACTAATCAAAATCAGGACCTTATTCCTCCAAGAAAAAGGAAATGAAGATGTGAAAATATGTTTGTGA 2634 0.3554 MAKLCSLFFCLSLSLNYYFFTCLAMSNKNITTDELSLLAFKSSITLDPYHMVQNWSTSSSLCTWVGVTCDEQHGRVHSLDLSNMELEANNSFSGEIPKEVMTDLTQLRTINFENNLLSGNISSIIFNNSLLQYLFLGYNNLSGNLPSNICKGLPRLRTLDLSHNDFVGDMPTTWHQCENLERLALSSNDFNKGSMPDEMGNLNKLQYLYLSSNNLESEIPFSLFDITTLKIVKLGGNNLNGTLPSELCHSLPQLEIFVLSANRFEGSIPLSIGNCTSLKFLDLDDNHFSGSIPEEIGCLDKLETLQLSNNRLSGHVALKLFNISSLRILYLGNNSLSGILPSDMGNGFPNLEKLQIHGNMFVGNIPNGIANASKLTEIDFMNNEFSGIIPNVFGGLKFLESLRLDHNNNLKLYDSFGFNLLTSLTACRNLKYLSVSETSLSKLPKSIGNLTIGYFWADSSRIDGNFPLEIGNMSNLVRLSLSTNDLKGPIPATIKGLQKLQCLDFDNNGLQGSIVDELCEIRSLSDLYLSNNKLSGVLPTCLENMTSLRKLHLGYNRLTSGIPLSFWSLKDMLELNLSSNALKGNLPMEISKLRAIVLLDLSGNQISSNIPETIGLLTTLQTLSLANNKLYGTIPTSLGEMIILSFLDLSQNLLTSAIPKSLESLAFLESVNFSYNMLQGEIPDGGHFKNFTAQSFMHNEALCGNPLLQVPPCDKHRRNMIAHISDFGIAKLLDDGQSNIHTGTLATIGYVAPEYGSKGIVSIKGDVYSYGIMLMEMFTRKRPTDEMFAEELTLKTWISESMSNSVMEVVDSNLVQQHEKTIHDIVPHISSILALSLSCCADSPEERTNMTDITASLIKIRTLFLQEKGNEDVKICL 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre4g00691 877 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 423 717 - -
Trre4g00691 877 SUPERFAMILY RNI-like 321 684 - -
Trre4g00691 877 FunFam Leucine-rich repeat receptor-like protein kinase TDR 76 348 - -
Trre4g00691 877 Gene3D Ribonuclease Inhibitor 30 191 IPR032675 -
Trre4g00691 877 SUPERFAMILY L domain-like 55 420 - -
Trre4g00691 877 Gene3D Ribonuclease Inhibitor 413 717 IPR032675 -
Trre4g00691 877 Gene3D Ribonuclease Inhibitor 192 412 IPR032675 -
Trre4g00691 877 SUPERFAMILY Protein kinase-like (PK-like) 718 861 IPR011009 -
Trre4g00691 877 ProSiteProfiles Protein kinase domain profile. 500 865 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre4g00691 877 SMART LRR_typ_2 323 347 IPR003591 -
Trre4g00691 877 SMART LRR_typ_2 202 226 IPR003591 -
Trre4g00691 877 SMART LRR_typ_2 427 450 IPR003591 -
Trre4g00691 877 SMART LRR_typ_2 153 176 IPR003591 -
Trre4g00691 877 SMART LRR_typ_2 521 544 IPR003591 -
Trre4g00691 877 SMART LRR_typ_2 641 665 IPR003591 -
Trre4g00691 877 SMART LRR_typ_2 593 617 IPR003591 -
Trre4g00691 877 SMART LRR_typ_2 251 275 IPR003591 -
Trre4g00691 877 SMART LRR_typ_2 104 128 IPR003591 -
Trre4g00691 877 SMART LRR_typ_2 545 568 IPR003591 -
Trre4g00691 877 SMART LRR_typ_2 299 320 IPR003591 -
Trre4g00691 877 Pfam Leucine rich repeat 547 606 IPR001611 GO:0005515
Trre4g00691 877 Pfam Leucine rich repeat 349 408 IPR001611 GO:0005515
Trre4g00691 877 Pfam Leucine rich repeat 252 312 IPR001611 GO:0005515
Trre4g00691 877 Pfam Leucine Rich Repeat 325 343 IPR001611 GO:0005515
Trre4g00691 877 Gene3D Transferase(Phosphotransferase) domain 1 718 875 - -
Trre4g00691 877 Pfam Protein tyrosine and serine/threonine kinase 691 856 IPR001245 GO:0004672|GO:0006468
Trre4g00691 877 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 422 710 - -
Trre4g00691 877 Pfam Leucine rich repeat N-terminal domain 32 70 IPR013210 -
Trre4g00691 877 SMART LRR_sd22_2 593 612 - -
Trre4g00691 877 SMART LRR_sd22_2 153 182 - -
Trre4g00691 877 SMART LRR_sd22_2 617 640 - -
Trre4g00691 877 SMART LRR_sd22_2 473 499 - -
Trre4g00691 877 SMART LRR_sd22_2 202 223 - -
Trre4g00691 877 SMART LRR_sd22_2 299 325 - -
Trre4g00691 877 SMART LRR_sd22_2 545 566 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre4g00691 Trre-Chr4 4990197 4997558 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre4g00691 719 875 Receptor kinase-like Gene Family AT5G46330 33.526 2.28e-21 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trre4g00691 PK_Tyr_Ser-Thr 2.4e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre4g00691 - K13420 mtr:25481440 646.736